This site provides access to tools developed for the analysis of inter- and intra-host viral genetic diversity.
Tools
ATHLATES: HLA typing from exome capture sequencing
AV454: de novo consensus assembler designed for reads derived from diverse viral populations
PriSM: degenerate primer design tool optimized for genome sequencing applications
RC454: read alignment and error correction tool for cleaning 454 reads of process errors
V-Phaser & V-Profiler: variant calling and visualization tools to identify biological mutations in diverse populations
V-Phaser 2: improved version of the V-Phaser variant caller the works on ultra-deep Illumina paired end data
VICUNA: efficient intra-host de novo assembler for ultra-deep sequence data
V-FAT: automated finishing, annotation, and QA tool for viral assemblies
