There is a more recent set of videos and materials for this BroadE workshop. Please click here to view them.

BroadE: Indel realignment

The presentation above was filmed during the 2013 GATK Workshop, part of the BroadE Workshop series. The GATK Workshop covered the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit (GATK), using the “Best Practices” developed by the GATK team.

Workshop topics included the importance of each step to the calling process, the key operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of a dataset.

For more information and to view other videos from the 2013 GATK Workshop, please visit the GATK Workshop page.