BreakPointer

BreakPointer is a tool to pinpoint rearrangement breakpoints using paired-end next generation sequencing reads.

Contact: 
http://www.broadinstitute.org/cancer/cga/cga_forums
Publication Info: 
Title: 
Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability
Notes: 
Drier Y, Lawrence MS, Carter SL, Stewart C, Gabriel SB, Lander ES, Meyerson M, Beroukhim R, Getz G.