Data Release for Mammalian Genome Project

Project Data Release Summary - Mammalian Genome Project

This list represents the genomes that were used in the analysis of the Mammalian Genome Project (aka "29 Mammals.")  These builds are not necessarily the most recent builds of an organisms genome (see here for those.)

Unless otherwise stated, genome builds were sequenced at the Broad Institute.  ALL genomes were assembled at the Broad Institute. For all genomes, links are provided to a project page, the assembly files and NCBI's record for the latest build. When applicable, links are also provided for Ensembl (for gene annotation) and UCSC (for data visualization.)

Mammalian Genome Projects

Organism Assembly Status Genbank Accession Ensembl Annotation UCSC Browser Notes
Alpaca
Vicugna pacos
Complete ABRR01000000 Ensembl UCSC 2x coverage, sequenced at WashU
 
Armadillo (Nine-banded)
Dasypus novemicinctus
Complete AAGV020000000 Ensembl UCSC

2x coverage

Bushbaby
Otolemur garnetti
Complete AAQR01000000 Ensembl UCSC 2x coverage
Cat
Felis catus
Complete AANG01000000 Ensembl UCSC 2x coverage, sequenced at Agencourt
 
Chimpanzee
Pan troglodytus
Complete AACZ03000000 Ensembl UCSC 7x coverage
Cow
Bos taurus
Complete DAAA02000000 Ensembl UCSC 7x coverage
Dog
Canis Familaiaris
Complete AACN010000000 Ensembl UCSC 7x coverage, anchored
Dolphin, Bottlenosed
Tursiops truncatus
Complete ABRN01000000 Ensembl UCSC 2x coverage, sequenced at Baylor
 
Elephant, African Savannah
Loxodonta africana
Complete AAGU03000000 Ensembl UCSC 7x coverage, anchoring in progress
Guinea Pig
Cavia porcellus
Complete AAKN02000000 Ensembl UCSC 7x coverage
Hedgehog, European
Erinaceus europeaus
Complete AANN01000000 Ensembl UCSC 2x coverage
Horse
Equus caballus
Complete AAWR02000000 Ensembl UCSC 7x coverage (no 2X exists)
Human
Homo sapiens
Complete GRCh37.p10 Ensembl UCSC Deep
Kangaroo Rat
Dipodomys ordii
Complete ABRO01000000 Ensembl UCSC 2x coverage, sequenced at Baylor
 
Macaque
Macaca mulatta
Complete AANU01000000 Ensembl UCSC 2x coverage, sequenced at Baylor
 
Megabat (Fruitbat)
Pteropus vampyrus
Complete ABRP01000000 Ensembl UCSC 2x coverage, sequenced at Baylor
 
Microbat, Little Brown
Myotis lucifugus
Low coverage (2x) complete AAPE01000000 Ensembl UCSC 2x coverage
Mouse
Mus musculus
Complete GRCm38.p2 Ensembl UCSC 2x coverage
Mouse Lemur
Microcebus murinus
Complete ABDC01000000 Ensembl UCSC 2x coverage
Pika
Ochotona princeps
Complete AAYZ01000000 Ensembl UCSC 2x coverage
Rabbit, European
Oryctolagus cuniculus
Complete AAGW02000000 Ensembl UCSC 7x coverage, anchored
Rat
Rattus norvegicus
Complete AABR06000000 Ensembl UCSC 7x coverage
Rock Hyrax
Procavia capensis
Complete ABRQ01000000 Ensembl UCSC 2x coverage, sequenced at Baylor
 
Shrew, Common
Sorex araneus
Complete AALT01000000 Ensembl UCSC 2x coverage
Shrew, Tree
Tupaia belangeri
Complete AAPY01000000 Ensembl UCSC 2x coverage
Sloth (Two-toed)
Choloepus hoffmanni
Complete ABVD01000000 Ensembl UCSC 2x coverage, sequenced at WashU
 
Squirrel, Ground
Spermophilis tridecemlineatus
Complete AAQQ01000000 Ensembl UCSC 2x coverage
Tarsier
Tarsier syrichta
Complete ABRT010000000 Ensembl UCSC 2x coverage, sequenced at Baylor
 
Tenrec (Lesser hedgehog)
Echinops telfari
Complete AAIY01000000 Ensembl UCSC 2x coverage

 

For more information on these projects, please contact us at vertebrategenomes@broadinstitute.org.

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