Resources, services, and tools

Working with collaborators and contributors around the world, our scientists and engineers are accelerating discovery by:

  • assembling and harmonizing population-scale genomic and health data
  • generating massive, multi-omic biological datasets
  • developing advanced data processing and analysis methods
  • creating infrastructure for storing, sharing, and analyzing data at unlimited scale; and
  • building applications and portals that extract all available information from raw data.

Many additional tools, analysis pipelines, and applications developed by our scientists and collaborators are available on GitHub.

Depmap logo

Analysis and visualization portal empowering the discovery of cancer vulnerabilities.

CellProfiler

Cell image processing and analysis software designed for biologists.

CellProfiler Analyst

Interactive analysis and exploration software for data from high-throughput, image-based experiments.

Common Metabolic Diseases Knowledge Portal

Aggregated genetic, epigenomic, and computational results for multiple metabolic diseases and traits.

CMap logo

Perturbation-based cancer cell line gene expression profiles and signatures generated using the L1000 assay.

Covid-19 receptors

Broad data scientists and software engineers have developed several portals and datasets to support COVID-19-related research.

Drug Repurposing Hub

A curated and annotated collection of FDA-approved drugs, clinical trial drugs, and pre-clinical tool compounds.

ENCODE logo

Integrated, annotated encyclopedia of functional and regulatory elements in the genome.

GATK  logo

Industry standard for identifying SNPs and indels in germline DNA- and RNA-seq data.

gnomAD web

Aggregated and harmonized exome and genome sequencing data from more than 60 population-scale sequencing projects.

GTEx logo

A comprehensive public resource to study tissue-specific gene expression and regulation.

Hail logo

An open-source library for scalable data exploration and analysis, with a particular emphasis on genomics.

IGV logo

A high-performance, easy-to-use, interactive tool for the visual exploration of genomic data.

PRISM logo

Rapid, high-throughput multiplexed compound screening in genomically characterized human cancer cell-line models.

Single Cell portal logo

Single-cell -omic datasets from >400 research studies, representing several species, organ systems, and disease areas.

BroadE logo

Our primers and workshops help researchers learn about new technologies and advances in genetics, computation, and more.

Terra logo

A cloud-native platform for biomedical researchers to access data, run analysis tools, and collaborate.

Tumor Portal logo

Point mutation data from nearly 5,000 human cancers across 21 tumor types.

An archival list of tools and datasets

An archival list of tools and datasets is available here. NOTE: This list is no longer maintained.