Publications

Spatially aware deep learning reveals tumor heterogeneity patterns that encode distinct kidney cancer states.

Nyman J, Denize T, Bakouny Z, et al. Spatially aware deep learning reveals tumor heterogeneity patterns that encode distinct kidney cancer states. Cell reports. Medicine. 2023;4(9):101189. doi:10.1016/j.xcrm.2023.101189Google Scholar DOI PubMed

Clinical Pathway for Coronary Atherosclerosis in Patients Without Conventional Modifiable Risk Factors: JACC State-of-the-Art Review.

Figtree GA, Vernon ST, Harmer JA, et al. Clinical Pathway for Coronary Atherosclerosis in Patients Without Conventional Modifiable Risk Factors: JACC State-of-the-Art Review. Journal of the American College of Cardiology. 2023;82(13):1343-1359. doi:10.1016/j.jacc.2023.06.045Google Scholar DOI PubMed

Consumption of Ultraprocessed Food and Risk of Depression.

Samuthpongtorn C, Nguyen LH, Okereke OI, et al. Consumption of Ultraprocessed Food and Risk of Depression. JAMA network open. 2023;6(9):e2334770. doi:10.1001/jamanetworkopen.2023.34770Google Scholar DOI PubMed

Generation of mouse models carrying B cell restricted single or multiplexed loss-of-function mutations through CRISPR-Cas9 gene editing.

Hacken ET, Gruber M, Hernández-Sánchez M, et al. Generation of mouse models carrying B cell restricted single or multiplexed loss-of-function mutations through CRISPR-Cas9 gene editing. STAR protocols. 2023;4(4):102165. doi:10.1016/j.xpro.2023.102165Google Scholar DOI PubMed

TP63 fusions drive multicomplex enhancer rewiring, lymphomagenesis, and EZH2 dependence.

Wu G, Yoshida N, Liu J, et al. TP63 fusions drive multicomplex enhancer rewiring, lymphomagenesis, and EZH2 dependence. Science translational medicine. 2023;15(714):eadi7244. doi:10.1126/scitranslmed.adi7244Google Scholar DOI PubMed

De novo PHF5A variants are associated with craniofacial abnormalities, developmental delay, and hypospadias.

Harms FL, Dingemans AJM, Hempel M, et al. De novo PHF5A variants are associated with craniofacial abnormalities, developmental delay, and hypospadias. Genetics in medicine : official journal of the American College of Medical Genetics. 2023:100964. doi:10.1016/j.gim.2023.100964Google Scholar DOI PubMed

Association between timing and consistency of physical activity and type 2 diabetes: a cohort study on participants of the UK Biobank.

Tian C, Bürki C, Westerman KE, Patel CJ. Association between timing and consistency of physical activity and type 2 diabetes: a cohort study on participants of the UK Biobank. Diabetologia. 2023. doi:10.1007/s00125-023-06001-7Google Scholar DOI PubMed

National trends in asthma prevalence in South Korea before and during the COVID-19 pandemic, 1998-2021.

Park J, Nguyen A, Kattih M, et al. National trends in asthma prevalence in South Korea before and during the COVID-19 pandemic, 1998-2021. Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology. 2023. doi:10.1111/cea.14394Google Scholar DOI PubMed

Bridging Imaging Users to Imaging Analysis - A community survey.

Sivagurunathan S, Marcotti S, Nelson CJ, et al. Bridging Imaging Users to Imaging Analysis - A community survey. Journal of microscopy. 2023. doi:10.1111/jmi.13229Google Scholar DOI PubMed

A second update on mapping the human genetic architecture of COVID-19.

A second update on mapping the human genetic architecture of COVID-19. Nature. 2023;621(7977):E7-E26. doi:10.1038/s41586-023-06355-3Google Scholar DOI PubMed