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2016
Effect of Breed on Plasma Endothelin-1 Concentration, Plasma Renin Activity, and Serum Cortisol Concentration in Healthy Dogs.Höglund, K., Lequarré AS, Ljungvall I., McEntee K., Merveille AC, Wiberg M., Gouni V., Lundgren Willesen J., Hanås S., Wess G., Mejer Sørensen L., Tiret L., Kierczak M., Forsberg SK, Seppälä E., Lindblad-Toh K., Lohi H., Chetboul V., Fredholm M., and Häggström J. Journal of veterinary internal medicine / American College of Veterinary Internal Medicine, 2016/01/27, (2016) Read More / View Supplemental Materials
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Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.Zhou, Y., Zhu G., Charlesworth JC, Simpson S Jr, Rubicz R., Göring HH, Patsopoulos NA, Laverty C., Wu F., Henders A., Ellis JJ, van der Mei I., Montgomery GW, Blangero J., Curran JE, Johnson MP, Martin NG, Nyholt DR, Taylor BV, and consortium ANZgene Multiple sclerosis (Houndmills, Basingstoke, England), 2016/01/27, (2016) Read More / View Supplemental Materials
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Higher brain BDNF gene expression is associated with slower cognitive decline in older adults.Buchman, AS, Yu L., Boyle PA, Schneider JA, De Jager PL, and Bennett DA Neurology, 2016/01/27, (2016) Read More / View Supplemental Materials
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Prominent scapulae mimicking an inherited myopathy expands the phenotype of CHD7-related disease.O'Grady, GL, Ma A., Sival D., Wong MT, Peduto T., Menezes MP, Young H., Waddell L., Ghaoui R., Needham M., Lek M., North KN, Macarthur DG, van Ravenswaaij-Arts CM, and Clarke NF European journal of human genetics : EJHG, 2016/01/27, (2016) Read More / View Supplemental Materials
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Proteogenomics: Opportunities and Caveats.Dimitrakopoulos, L., Prassas I., Diamandis EP, Nesvizhskii A., Kislinger T., Jaffe J., and Drabovich A. Clinical chemistry, 2016/01/27, (2016) Read More / View Supplemental Materials
An engineered multicomponent bone marrow niche for the recapitulation of hematopoiesis at ectopic transplantation sites.Ventura Ferreira, MS, Bergmann C., Bodensiek I., Peukert K., Abert J., Kramann R., Kachel P., Rath B., Rütten S., Knuchel R., Ebert BL, Fischer H., Brümmendorf TH, and Schneider RK Journal of hematology & oncology, 2016/01/25, Volume 9, Issue 1, p.4, (2016) Read More / View Supplemental Materials
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Toward clinical genomics in everyday medicine: perspectives and recommendations.Delaney, SK, Hultner ML, Jacob HJ, Ledbetter DH, McCarthy JJ, Ball M., Beckman KB, Belmont JW, Bloss CS, Christman MF, Cosgrove A., Damiani SA, Danis T., Delledonne M., Dougherty MJ, Dudley JT, Faucett WA, Friedman JR, Haase DH, Hays TS, et al. Expert review of molecular diagnostics, 2016/01/25, (2016) Read More / View Supplemental Materials
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Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.Pattaro, C., Teumer A., Gorski M., Chu AY, Li M., Mijatovic V., Garnaas M., Tin A., Sorice R., Li Y., Taliun D., Olden M., Foster M., Yang Q., Chen MH, Pers TH, Johnson AD, Ko YA, Fuchsberger C., Tayo B., et al. Nature communications, 2016/01/21, Volume 7, p.10023, (2016) Read More / View Supplemental Materials
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Lineage-specific enhancers activate self-renewal genes in macrophages and embryonic stem cells.Soucie, EL, Weng Z., Geirsdóttir L., Molawi K., Maurizio J., Fenouil R., Mossadegh-Keller N., Gimenez G., VanHille L., Beniazza M., Favret J., Berruyer C., Perrin P., Hacohen N., Andrau JC, Ferrier P., Dubreuil P., Sidow A., and Sieweke MH Science (New York, N.Y.), 2016/01/21, (2016) Read More / View Supplemental Materials
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The Power of Sophisticated Phenotypic Screening and Modern Mechanism-of-Action Methods.Wagner, BK, and Schreiber SL Cell chemical biology, 2016/01/21, Volume 23, Issue 1, p.3-9, (2016) Read More / View Supplemental Materials
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Programmed Ventricular Stimulation for Risk Stratification in the Brugada Syndrome: A Pooled Analysis.Sroubek, J., Probst V., Mazzanti A., Delise P., Castro Hevia J., Ohkubo K., Zorzi A., Champagne J., Kostopoulou A., Yin X., Napolitano C., Milan DJ, Wilde A., Sacher F., Borggrefe M., Ellinor PT, Theodorakis G., Nault I., Corrado D., Watanabe I., et al. Circulation, 2016/01/21, (2016) Read More / View Supplemental Materials
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An eMERGE Clinical Center at Partners Personalized Medicine.Smoller, JW, Karlson EW, Green RC, Kathiresan S., Macarthur DG, Talkowski ME, Murphy SN, and Weiss ST Journal of personalized medicine, 2016/01/20, Volume 6, Issue 1, (2016) Read More / View Supplemental Materials
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H2A.Z.1 Monoubiquitylation Antagonizes BRD2 to Maintain Poised Chromatin in ESCs.Surface, LE, Fields PA, Subramanian V., Behmer R., Udeshi N., Peach SE, Carr SA, Jaffe JD, and Boyer LA Cell reports, 2016/01/20, (2016) Read More / View Supplemental Materials
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Information Technology Support for Clinical Genetic Testing within an Academic Medical Center.Aronson, S., Mahanta L., Ros LL, Clark E., Babb L., Oates M., Rehm H., and Lebo M. Journal of personalized medicine, 2016/01/20, Volume 6, Issue 1, (2016) Read More / View Supplemental Materials
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Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.Haradhvala, NJ, Polak P., Stojanov P., Covington KR, Shinbrot E., Hess JM, Rheinbay E., Kim J., Maruvka YE, Braunstein LZ, Kamburov A., Hanawalt PC, Wheeler DA, Koren A., Lawrence MS, and Getz G. Cell, 2016/01/20, (2016) Read More / View Supplemental Materials
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Quantifying prion disease penetrance using large population control cohorts.Minikel, EV, Vallabh SM, Lek M., Estrada K., Samocha KE, Sathirapongsasuti JF, McLean CY, Tung JY, Yu LP, Gambetti P., Blevins J., Zhang S., Cohen Y., Chen W., Yamada M., Hamaguchi T., Sanjo N., Mizusawa H., Nakamura Y., Kitamoto T., et al. Science translational medicine, 2016/01/20, Volume 8, Issue 322, p.322ra9, (2016) Read More / View Supplemental Materials
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Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation.Godec, J., Tan Y., Liberzon A., Tamayo P., Bhattacharya S., Butte AJ, Mesirov J. P., and Haining WN Immunity, 2016/01/19, Volume 44, Issue 1, p.194-206, (2016) Read More / View Supplemental Materials
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Metabolic Profiling of Right Ventricular-Pulmonary Vascular Function Reveals Circulating Biomarkers of Pulmonary Hypertension.Lewis, GD, Ngo D., Hemnes AR, Farrell L., Domos C., Pappagianopoulos PP, Dhakal BP, Souza A., Shi X., Pugh ME, Beloiartsev A., Sinha S., Clish CB, and Gerszten RE Journal of the American College of Cardiology, 2016/01/19, Volume 67, Issue 2, p.174-89, (2016) Read More / View Supplemental Materials
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Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.Qu, K., Garamszegi S., Wu F., Thorvaldsdottir H., Liefeld T., Ocana M., Borges-Rivera D., Pochet N., Robinson JT, Demchak B., Hull T., Ben-Artzi G., Blankenberg D., Barber GP, Lee BT, Kuhn RM, Nekrutenko A., Segal E., Ideker T., Reich M., et al. Nature methods, 2016/01/18, (2016) Read More / View Supplemental Materials
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Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.Doench, JG, Fusi N., Sullender M., Hegde M., Vaimberg EW, Donovan KF, Smith I., Tothova Z., Wilen C., Orchard R., Virgin HW, Listgarten J., and Root DE Nature biotechnology, 2016/01/18, (2016) Read More / View Supplemental Materials
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Disease signatures for schizophrenia and bipolar disorder using patient-derived induced pluripotent stem cells.Watmuff, B., Berkovitch SS, Huang JH, Iaconelli J., Toffel S., and Karmacharya R. Molecular and cellular neurosciences, 2016/01/14, (2016) Read More / View Supplemental Materials
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The Heroes of CRISPR.Lander, E. S. Cell, 2016/01/14, Volume 164, Issue 1-2, p.18-28, (2016) Read More / View Supplemental Materials
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Cerebrovascular and microglial states are not altered by functional neuroinflammatory gene variant.Felsky, D., De Jager PL, Schneider JA, Arfanakis K., Fleischman DA, Arvanitakis Z., Honer WG, Pouget JG, Mizrahi R., Pollock BG, Kennedy JL, Bennett DA, Voineskos AN, and authors of the Alzheimer’s Disease Neuroimaging Initiative Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism, 2016/01/13, (2016) Read More / View Supplemental Materials
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High-Throughput Assay and Discovery of Small Molecules that Interrupt Malaria Transmission.Plouffe, DM, Wree M., Du AY, Meister S., Li F., Patra K., Lubar A., Okitsu SL, Flannery EL, Kato N., Tanaseichuk O., Comer E., Zhou B., Kuhen K., Zhou Y., Leroy D., Schreiber SL, Scherer CA, Vinetz J., and Winzeler EA Cell host & microbe, 2016/01/13, Volume 19, Issue 1, p.114-26, (2016) Read More / View Supplemental Materials
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Rare variant associations with waist-to-hip ratio in European-American and African-American women from the NHLBI-Exome Sequencing Project.Kan, M., Auer PL, Wang GT, Bucasas KL, Hooker S., Rodriguez A., Li B., Ellis J., Adrienne Cupples L., Ida Chen YD, Dupuis J., Fox CS, Gross MD, Smith JD, Heard-Costa N., Meigs JB, Pankow JS, Rotter JI, Siscovick D., Wilson JG, et al. European journal of human genetics : EJHG, 2016/01/13, (2016) Read More / View Supplemental Materials
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Actin capping protein CAPZB regulates cell morphology, differentiation, and neural crest migration in craniofacial morphogenesis.Mukherjee, K., Ishii K., Pillalamarri V., Kammin T., Atkin JF, Hickey SE, Xi QJ, Gusella JF, Talkowski ME, Morton CC, Maas RL, and Liao EC Human molecular genetics, 2016/01/11, (2016) Read More / View Supplemental Materials
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Atrial Fibrillation Begets Heart Failure and Vice Versa: Temporal Associations and Differences in Preserved vs. Reduced Ejection Fraction.Santhanakrishnan, R., Wang N., Larson MG, Magnani JW, McManus DD, Lubitz SA, Ellinor PT, Cheng S., Vasan RS, Lee DS, Wang TJ, Levy D., Benjamin EJ, and Ho JE Circulation, 2016/01/08, (2016) Read More / View Supplemental Materials
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High-Throughput Screen in Cryptococcus neoformans Identifies a Novel Molecular Scaffold That Inhibits Cell Wall Integrity Pathway Signaling.Hartland, K., Pu J., Palmer M., Dandapani S., Moquist PN, Munoz B., DiDone L., Schreiber SL, and Krysan DJ ACS infectious diseases, 2016/01/08, Volume 2, Issue 1, p.93-102, (2016) Read More / View Supplemental Materials
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Emerging Frontiers in Drug Delivery.Tibbitt, MW, Dahlman JE, and Langer R. Journal of the American Chemical Society, 2016/01/07, (2016) Read More / View Supplemental Materials
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Label-free cell cycle analysis for high-throughput imaging flow cytometry.Blasi, T., Hennig H., Summers HD, Theis FJ, Cerveira J., Patterson JO, Davies D., Filby A., Carpenter AE, and Rees P. Nature communications, 2016/01/07, Volume 7, p.10256, (2016) Read More / View Supplemental Materials
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Training the Future Leaders in Personalized Medicine.Mason-Suares, H., Sweetser DA, Lindeman NI, and Morton CC Journal of personalized medicine, 2016/01/07, Volume 6, Issue 1, (2016) Read More / View Supplemental Materials
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The (in)famous GWAS P-value threshold revisited and updated for low-frequency variants.Fadista, J., Manning AK, Florez JC, and Groop L. European journal of human genetics : EJHG, 2016/01/06, (2016) Read More / View Supplemental Materials
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A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells.Jolly, AL, Luan CH, Dusel BE, Dunne SF, Winding M., Dixit VJ, Robins C., Saluk JL, Logan DJ, Carpenter AE, Sharma M., Dean D., Cohen AR, and Gelfand VI Cell reports, 2016/01/06, (2016) Read More / View Supplemental Materials
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Mice with Shank3 Mutations Associated with ASD and Schizophrenia Display Both Shared and Distinct Defects.Zhou, Y., Kaiser T., Monteiro P., Zhang X., Van der Goes MS, Wang D., Barak B., Zeng M., Li C., Lu C., Wells M., Amaya A., Nguyen S., Lewis M., Sanjana N., Zhou Y., Zhang M., Zhang F., Fu Z., and Feng G. Neuron, 2016/01/06, Volume 89, Issue 1, p.147-62, (2016) Read More / View Supplemental Materials
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A microfluidic platform enabling single-cell RNA-seq of multigenerational lineages.Kimmerling, RJ, Lee Szeto G., Li JW, Genshaft AS, Kazer SW, Payer KR, de Riba Borrajo J., Blainey PC, Irvine DJ, Shalek AK, and Manalis SR Nature communications, 2016/01/06, Volume 7, p.10220, (2016) Read More / View Supplemental Materials
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Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer.Hu, SS, Lin CY, He HH, Witwicki RM, Tabassum DP, Roberts JM, Janiszewska M., Jin Huh S., Liang Y., Ryan J., Doherty E., Mohammed H., Guo H., Stover DG, Ekram MB, Peluffo G., Brown J., D'Santos C., Krop IE, Dillon D., et al. Nature, 2016/01/06, (2016) Read More / View Supplemental Materials
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Role of Tet1/3 Genes and Chromatin Remodeling Genes in Cerebellar Circuit Formation.Zhu, X., Girardo D., Govek EE, John K., Mellén M., Tamayo P., Mesirov J. P., and Hatten ME Neuron, 2016/01/06, Volume 89, Issue 1, p.100-12, (2016) Read More / View Supplemental Materials
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Common Variation in Atrial Fibrillation: Navigating the Path from Genetic Association to Mechanism.Tucker, NR, Clauss S., and Ellinor PT Cardiovascular research, 2016/01/04, (2016) Read More / View Supplemental Materials
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Identification of a novel susceptibility locus at 13q34 and refinement of the 20p12.2 region as a multi-signal locus associated with bladder cancer risk in individuals of European ancestry.Figueroa, JD, Middlebrooks CD, Banday AR, Ye Y., Garcia-Closas M., Chatterjee N., Koutros S., Kiemeney LA, Rafnar T., Bishop T., Barnes HF, Matullo G., Golka K., Gago-Dominguez M., Taylor J., Fletcher T., Siddiq A., Cortessis VK, Kooperberg C., Cussenot O., et al. Human molecular genetics, 2016/01/04, (2016) Read More / View Supplemental Materials
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Lipid droplets go nuclear.Farese RV, Jr, and Walther TC The Journal of cell biology, 2016/01/04, Volume 212, Issue 1, p.7-8, (2016) Read More / View Supplemental Materials
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A twin study of rheumatoid arthritis in the Japanese population.Terao, C., Ikari K., Nakayamada S., Takahashi Y., Yamada R., Ohmura K., Hashimoto M., Furu M., Ito H., Fujii T., Yoshida S., Saito K., Taniguchi A., Momohara S., Yamanaka H., Mimori T., and Matsuda F. Modern rheumatology / the Japan Rheumatism Association, 2016/01/04, p.1-22, (2016) Read More / View Supplemental Materials
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Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).Klionsky, DJ, Abdelmohsen K., Abe A., Abedin MJ, Abeliovich H., Acevedo Arozena A., Adachi H., Adams CM, Adams PD, Adeli K., Adhihetty PJ, Adler SG, Agam G., Agarwal R., Aghi MK, Agnello M., Agostinis P., Aguilar PV, Aguirre-Ghiso J., Airoldi EM, et al. Autophagy, 2016/01/02, Volume 12, Issue 1, p.1-222, (2016) Read More / View Supplemental Materials
Adaptive Landscape by Environment Interactions Dictate Evolutionary Dynamics in Models of Drug Resistance.Ogbunugafor, CB, Wylie CS, Diakite I., Weinreich DM, and Hartl DL PLoS computational biology, 2016/01/01, Volume 12, Issue 1, p.e1004710, (2016) Read More / View Supplemental Materials
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Applications of CRISPR-Cas systems in neuroscience.Heidenreich, M., and Zhang F. Nature reviews. Neuroscience, 2016/01/01, Volume 17, Issue 1, p.36-44, (2016) Read More / View Supplemental Materials
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Associations between plasma branched-chain amino acids, β-aminoisobutyric acid and body composition.Rietman, A., Stanley TL, Clish C., Mootha V., Mensink M., Grinspoon SK, and Makimura H. Journal of nutritional science, 2016/01/01, Volume 5, p.e6, (2016) Read More / View Supplemental Materials
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Baiting for Cancer: Using the Zebrafish as a Model in Liver and Pancreatic Cancer.Hwang, KL, and Goessling W. Advances in experimental medicine and biology, 2016/01/01, Volume 916, p.391-410, (2016) Read More / View Supplemental Materials
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CD44 Splice Variant v8-10 as a Marker of Serous Ovarian Cancer Prognosis.Sosulski, A., Horn H., Zhang L., Coletti C., Vathipadiekal V., Castro CM, Birrer MJ, Nagano O., Saya H., Lage K., Donahoe PK, and Pépin D. PloS one, 2016/01/01, Volume 11, Issue 6, p.e0156595, (2016) Read More / View Supplemental Materials
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Comparative Transcriptomics in Yeasts.Thompson, DA Methods in molecular biology (Clifton, N.J.), 2016/01/01, Volume 1361, p.67-76, (2016) Read More / View Supplemental Materials
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Consent Codes: Upholding Standard Data Use Conditions.Dyke, SO, Philippakis AA, Rambla De Argila J., Paltoo DN, Luetkemeier ES, Knoppers BM, Brookes AJ, Spalding JD, Thompson M., Roos M., Boycott KM, Brudno M., Hurles M., Rehm HL, Matern A., Fiume M., and Sherry ST PLoS genetics, 2016/01/01, Volume 12, Issue 1, p.e1005772, (2016) Read More / View Supplemental Materials
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Development of Soft Tissue Sarcomas in Ribosomal Proteins L5 and S24 Heterozygous Mice.Kazerounian, S., Ciarlini PD, Yuan D., Ghazvinian R., Alberich-Jorda M., Joshi M., Zhang H., Beggs AH, and Gazda HT Journal of Cancer, 2016/01/01, Volume 7, Issue 1, p.32-6, (2016) Read More / View Supplemental Materials
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Endoderm specification and liver development.Goessling, W., and Stainier DY Methods in cell biology, 2016/01/01, Volume 134, p.463-83, (2016) Read More / View Supplemental Materials
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Evaluation of Presumably Disease Causing SCN1A Variants in a Cohort of Common Epilepsy Syndromes.Lal, D., Reinthaler EM, Dejanovic B., May P., Thiele H., Lehesjoki AE, Schwarz G., Riesch E., Ikram MA, Duijn CM, Uitterlinden AG, Hofman A., Steinböck H., Gruber-Sedlmayr U., Neophytou B., Zara F., Hahn A., Genetic Commission of the Italian League against Epilepsy, EuroEPINOMICS CoGIE Consortium, Gormley P., et al. PloS one, 2016/01/01, Volume 11, Issue 3, p.e0150426, (2016) Read More / View Supplemental Materials
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Functional Implications of Human-Specific Changes in Great Ape microRNAs.Gallego, A., Melé M., Balcells I., García-Ramallo E., Torruella-Loran I., Fernández-Bellon H., Abelló T., Kondova I., Bontrop R., Hvilsom C., Navarro A., Marquès-Bonet T., and Espinosa-Parrilla Y. PloS one, 2016/01/01, Volume 11, Issue 4, p.e0154194, (2016) Read More / View Supplemental Materials
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Glutamate Receptors in Alzheimer's Disease: Mechanisms and Therapies.Anggono, V., Tsai LH, and Götz J. Neural plasticity, 2016/01/01, Volume 2016, p.8256196, (2016) Read More / View Supplemental Materials
High Throughput Screen for Escherichia coli Twin Arginine Translocation (Tat) Inhibitors.Bageshwar, UK, VerPlank L., Baker D., Dong W., Hamsanathan S., Whitaker N., Sacchettini JC, and Musser SM PloS one, 2016/01/01, Volume 11, Issue 2, p.e0149659, (2016) Read More / View Supplemental Materials
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High-Quality Exome Sequencing of Whole-Genome Amplified Neonatal Dried Blood Spot DNA.Poulsen, JB, Lescai F., Grove J., Bækvad-Hansen M., Christiansen M., Hagen CM, Maller J., Stevens C., Li S., Li Q., Sun J., Wang J., Nordentoft M., Werge TM, Mortensen PB, Børglum AD, Daly M., Hougaard DM, Bybjerg-Grauholm J., and Hollegaard MV PloS one, 2016/01/01, Volume 11, Issue 4, p.e0153253, (2016) Read More / View Supplemental Materials
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Impact of Stress on the Brain: Pathology, Treatment and Prevention.Ressler, KJ, and Smoller JW Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology, 2016/01/01, Volume 41, Issue 1, p.1-2, (2016) Read More / View Supplemental Materials
An Improved microRNA Annotation of the Canine Genome.Penso-Dolfin, L., Swofford R., Johnson J., Alföldi J., Lindblad-Toh K., Swarbreck D., Moxon S., and Di Palma F. PloS one, 2016/01/01, Volume 11, Issue 4, p.e0153453, (2016) Read More / View Supplemental Materials
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Investigation of Genetic Variation Underlying Central Obesity amongst South Asians.Scott, WR, Zhang W., Loh M., Tan ST, Lehne B., Afzal U., Peralta J., Saxena R., Ralhan S., Wander GS, Bozaoglu K., Sanghera DK, Elliott P., Scott J., Chambers JC, and Kooner JS PloS one, 2016/01/01, Volume 11, Issue 5, p.e0155478, (2016) Read More / View Supplemental Materials
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Metabolomic Profiles of Body Mass Index in the Framingham Heart Study Reveal Distinct Cardiometabolic Phenotypes.Ho, JE, Larson MG, Ghorbani A., Cheng S., Chen MH, Keyes M., Rhee EP, Clish CB, Vasan RS, Gerszten RE, and Wang TJ PloS one, 2016/01/01, Volume 11, Issue 2, p.e0148361, (2016) Read More / View Supplemental Materials
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MiR-449a Affects Epithelial Proliferation during the Pseudoglandular and Canalicular Phases of Avian and Mammal Lung Development.Sanford, EL, Choy KW, Donahoe PK, Tracy AA, Hila R., Loscertales M., and Longoni M. PloS one, 2016/01/01, Volume 11, Issue 2, p.e0149425, (2016) Read More / View Supplemental Materials
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Multiplexed Immunoaffinity Enrichment of Peptides with Anti-peptide Antibodies and Quantification by Stable Isotope Dilution Multiple Reaction Monitoring Mass Spectrometry.Kuhn, E., and Carr SA Methods in molecular biology (Clifton, N.J.), 2016/01/01, Volume 1410, p.135-67, (2016) Read More / View Supplemental Materials
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Neoepitopes and CD3-Positive and CD8-Positive Cells in Polymerase e-Mutated and Microsatellite-Instable Endometrial Cancers-Reply.Howitt, BE, Shukla SA, and Konstantinopoulos PA JAMA oncology, 2016/01/01, Volume 2, Issue 1, p.141-2, (2016) Read More / View Supplemental Materials
PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes.Gregor, I., Dröge J., Schirmer M., Quince C., and McHardy AC PeerJ, 2016/01/01, Volume 4, p.e1603, (2016) Read More / View Supplemental Materials
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Recommendations for open data science.Gymrek, M., and Farjoun Y. GigaScience, 2016/01/01, Volume 5, p.22, (2016) Read More / View Supplemental Materials
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Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.Hoofnagle, AN, Whiteaker JR, Carr SA, Kuhn E., Liu T., Massoni SA, Thomas SN, Townsend RR, Zimmerman LJ, Boja E., Chen J., Crimmins DL, Davies SR, Gao Y., Hiltke TR, Ketchum KA, Kinsinger CR, Mesri M., Meyer MR, Qian WJ, et al. Clinical chemistry, 2016/01/01, Volume 62, Issue 1, p.48-69, (2016) Read More / View Supplemental Materials
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Reconstruction and Analysis of the Evolution of Modular Transcriptional Regulatory Programs Using Arboretum.Knaack, SA, Thompson DA, and Roy S. Methods in molecular biology (Clifton, N.J.), 2016/01/01, Volume 1361, p.375-89, (2016) Read More / View Supplemental Materials
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Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis.Krueger, AS, Munck C., Dantas G., Church GM, Galagan J., Lehár J., and Sommer MO PloS one, 2016/01/01, Volume 11, Issue 1, p.e0147651, (2016) Read More / View Supplemental Materials
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Total and Differential Leukocyte Counts in Relation to Incidence of Diabetes Mellitus: A Prospective Population-Based Cohort Study.Borné, Y., Smith JG, Nilsson PM, Melander O., Hedblad B., and Engström G. PloS one, 2016/01/01, Volume 11, Issue 2, p.e0148963, (2016) Read More / View Supplemental Materials
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Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.Whiteaker, JR, Halusa GN, Hoofnagle AN, Sharma V., Maclean B., Yan P., Wrobel JA, Kennedy J., Mani D. R., Zimmerman LJ, Meyer MR, Mesri M., Boja E., Carr SA, Chan DW, Chen X., Chen J., Davies SR, Ellis MJ, Fenyö D., et al. Methods in molecular biology (Clifton, N.J.), 2016/01/01, Volume 1410, p.223-36, (2016) Read More / View Supplemental Materials
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Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction.Winglee, K., Manson McGuire A., Maiga M., Abeel T., Shea T., Desjardins CA, Diarra B., Baya B., Sanogo M., Diallo S., Earl AM, and Bishai WR PLoS neglected tropical diseases, 2016/01/01, Volume 10, Issue 1, p.e0004332, (2016) Read More / View Supplemental Materials
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2015
In vivo gene editing in dystrophic mouse muscle and muscle stem cells.Tabebordbar, M., Zhu K., Cheng JK, Chew WL, Widrick JJ, Yan WX, Maesner C., Wu EY, Xiao R., Ran FA, Cong L., Zhang F., Vandenberghe LH, Church GM, and Wagers AJ Science (New York, N.Y.), 2015/12/31, (2015) Read More / View Supplemental Materials
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In vivo genome editing improves muscle function in a mouse model of Duchenne muscular dystrophy.Nelson, CE, Hakim CH, Ousterout DG, Thakore PI, Moreb EA, Rivera RM, Madhavan S., Pan X., Ran FA, Yan WX, Asokan A., Zhang F., Duan D., and Gersbach CA Science (New York, N.Y.), 2015/12/31, (2015) Read More / View Supplemental Materials
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Mutations in HSPB8 causing a new phenotype of distal myopathy and motor neuropathy.Ghaoui, R., Palmio J., Brewer J., Lek M., Needham M., Evilä A., Hackman P., Jonson PH, Penttilä S., Vihola A., Huovinen S., Lindfors M., Davis RL, Waddell L., Kaur S., Yiannikas C., North K., Clarke N., Macarthur DG, Sue CM, et al. Neurology, 2015/12/30, (2015) Read More / View Supplemental Materials
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Sustained Akt activity is required to maintain cell viability in seborrheic keratosis, a benign epithelial tumor.Neel, VA, Todorova K., Wang J., Kwon E., Kang M., Liu Q., Gray N., Lee SW, and Mandinova A. The Journal of investigative dermatology, 2015/12/28, (2015) Read More / View Supplemental Materials
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Development of a therapeutic monoclonal antibody that targets secreted fatty acid-binding protein aP2 to treat type 2 diabetes.Burak, MF, Inouye KE, White A., Lee A., Tuncman G., Calay ES, Sekiya M., Tirosh A., Eguchi K., Birrane G., Lightwood D., Howells L., Odede G., Hailu H., West S., Garlish R., Neale H., Doyle C., Moore A., and Hotamisligil GS Science translational medicine, 2015/12/23, Volume 7, Issue 319, p.319ra205, (2015) Read More / View Supplemental Materials
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High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction.McClay, JL, Shabalin AA, Dozmorov MG, Adkins DE, Kumar G., Nerella S., Clark SL, Bergen SE, Swedish Schizophrenia Consortium, Hultman CM, Magnusson PK, Sullivan PF, Aberg KA, and van den Oord EJ Genome biology, 2015/12/23, Volume 16, Issue 1, p.291, (2015) Read More / View Supplemental Materials
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Insulator dysfunction and oncogene activation in IDH mutant gliomas.Flavahan, WA, Drier Y., Liau BB, Gillespie SM, Venteicher AS, Stemmer-Rachamimov AO, Suvà ML, and Bernstein BE Nature, 2015/12/23, (2015) Read More / View Supplemental Materials
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The Molecular Signatures Database (MSigDB) hallmark gene set collection.Liberzon, A., Birger C., Thorvaldsdóttir H., Ghandi M., Mesirov J. P., and Tamayo P. Cell systems, 2015/12/23, Volume 1, Issue 6, p.417-425, (2015) Read More / View Supplemental Materials
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Resensitization to Crizotinib by the Lorlatinib ALK Resistance Mutation L1198F.Shaw, AT, Friboulet L., Leshchiner I., Gainor JF, Bergqvist S., Brooun A., Burke BJ, Deng YL, Liu W., Dardaei L., Frias RL, Schultz KR, Logan J., James LP, Smeal T., Timofeevski S., Katayama R., Iafrate AJ, Le L., McTigue M., et al. The New England journal of medicine, 2015/12/23, (2015) Read More / View Supplemental Materials
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Targetable genetic features of primary testicular and primary central nervous system lymphomas.Chapuy, B., Roemer MG, Stewart C., Tan Y., Abo RP, Zhang L., Dunford AJ, Meredith DM, Thorner AR, Jordanova ES, Liu G., Feuerhake F., Ducar MD, Illerhaus G., Gusenleitner D., Linden EA, Sun HH, Homer H., Aono M., Pinkus GS, et al. Blood, 2015/12/23, (2015) Read More / View Supplemental Materials
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The metabolic fingerprint of p,p'-DDE and HCB exposure in humans.Salihovic, S., Ganna A., Fall T., Broeckling CD, Prenni JE, van Bavel B., Lind PM, Ingelsson E., and Lind L. Environment international, 2015/12/22, Volume 88, p.60-66, (2015) Read More / View Supplemental Materials
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RECQL5 Suppresses Oncogenic JAK2-Induced Replication Stress and Genomic Instability.Chen, E., Ahn JS, Sykes DB, Breyfogle LJ, Godfrey AL, Nangalia J., Ko A., DeAngelo DJ, Green AR, and Mullally A. Cell reports, 2015/12/22, Volume 13, Issue 11, p.2345-52, (2015) Read More / View Supplemental Materials
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Tools for the Microbiome: Nano and Beyond.Biteen, JS, Blainey PC, Cardon ZG, Chun M., Church GM, Dorrestein PC, Fraser SE, Gilbert JA, Jansson JK, Knight R., Miller JF, Ozcan A., Prather KA, Quake SR, Ruby EG, Silver PA, Taha S., van den Engh G., Weiss PS, Wong GC, et al. ACS nano, 2015/12/22, (2015) Read More / View Supplemental Materials
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Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome.Shea, JM, Serra RW, Carone BR, Shulha HP, Kucukural A., Ziller MJ, Vallaster MP, Gu H., Tapper AR, Gardner PD, Meissner A., Garber M., and Rando OJ Developmental cell, 2015/12/21, Volume 35, Issue 6, p.750-8, (2015) Read More / View Supplemental Materials
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Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma.Okosun, J., Wolfson RL, Wang J., Araf S., Wilkins L., Castellano BM, Escudero-Ibarz L., Al Seraihi AF, Richter J., Bernhart SH, Efeyan A., Iqbal S., Matthews J., Clear A., Guerra-Assunção JA, Bödör C., Quentmeier H., Mansbridge C., Johnson P., Davies A., et al. Nature genetics, 2015/12/21, (2015) Read More / View Supplemental Materials
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Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation that underlies Dun camouflage color in horses.Imsland, F., McGowan K., Rubin CJ, Henegar C., Sundström E., Berglund J., Schwochow D., Gustafson U., Imsland P., Lindblad-Toh K., Lindgren G., Mikko S., Millon L., Wade C., Schubert M., Orlando L., Penedo MC, Barsh GS, and Andersson L. Nature genetics, 2015/12/21, (2015) Read More / View Supplemental Materials
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Many lncRNAs, 5'UTRs, and pseudogenes are translated and some are likely to express functional proteins.Ji, Z., Song R., Regev A., and Struhl K. eLife, 2015/12/19, Volume 4, (2015) Read More / View Supplemental Materials
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Analysis of the ACTN3 Heterozygous Genotype Suggests That α-Actinin-3 Controls Sarcomeric Composition and Muscle Function in a Dose-Dependent Fashion.Hogarth, MW, Garton FC, Houweling PJ, Tukiainen T., Lek M., Macarthur DG, Seto JT, Quinlan KG, Yang N., Head SI, and North KN Human molecular genetics, 2015/12/17, (2015) Read More / View Supplemental Materials
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Structural Basis of Neurohormone Perception by the Receptor Tyrosine Kinase Torso.Jenni, S., Goyal Y., von Grotthuss M., Shvartsman SY, and Klein DE Molecular cell, 2015/12/17, Volume 60, Issue 6, p.941-52, (2015) Read More / View Supplemental Materials
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Evidence of Common Genetic Overlap Between Schizophrenia and Cognition.Hubbard, L., Tansey KE, Rai D., Jones P., Ripke S., Chambert KD, Moran JL, McCarroll SA, Linden DE, Owen MJ, O'Donovan MC, Walters JT, and Zammit S. Schizophrenia bulletin, 2015/12/16, (2015) Read More / View Supplemental Materials
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JAKMIP1: Translating the Message for Social Behavior.Penney, J., and Tsai LH Neuron, 2015/12/16, Volume 88, Issue 6, p.1070-2, (2015) Read More / View Supplemental Materials
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Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR.Li, W., Köster J., Xu H., Chen CH, Xiao T., Liu JS, Brown M., and Liu XS Genome biology, 2015/12/16, Volume 16, Issue 1, p.281, (2015) Read More / View Supplemental Materials
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Reply to Melillo: Woranso-Mille is consistent with an australopithecine shoulder intermediate between African apes and Homo.Young, NM, Capellini TD, Roach NT, and Alemseged Z. Proceedings of the National Academy of Sciences of the United States of America, 2015/12/16, (2015) Read More / View Supplemental Materials
Genome-wide association study of 25(OH) Vitamin D concentrations in Punjabi Sikhs: Results of the Asian Indian diabetic heart study.Sapkota, BR, Hopkins R., Bjonnes A., Ralhan S., Wander GS, Mehra NK, Singh JR, Blackett PR, Saxena R., and Sanghera DK The Journal of steroid biochemistry and molecular biology, 2015/12/15, (2015) Read More / View Supplemental Materials
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A genome-wide association study of kynurenic acid in cerebrospinal fluid: implications for psychosis and cognitive impairment in bipolar disorder.Sellgren, CM, Kegel ME, Bergen SE, Ekman CJ, Olsson S., Larsson M., Vawter MP, Backlund L., Sullivan PF, Sklar P., Smoller JW, Magnusson PK, Hultman CM, Walther-Jallow L., Svensson CI, Lichtenstein P., Schalling M., Engberg G., Erhardt S., and Landén M. Molecular psychiatry, 2015/12/15, (2015) Read More / View Supplemental Materials
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Contributions of microbiome and mechanical deformation to intestinal bacterial overgrowth and inflammation in a human gut-on-a-chip.Kim, HJ, Li H., Collins JJ, and Ingber DE Proceedings of the National Academy of Sciences of the United States of America, 2015/12/14, (2015) Read More / View Supplemental Materials
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Correlating chemical sensitivity and basal gene expression reveals mechanism of action.Rees, MG, Seashore-Ludlow B., Cheah JH, Adams DJ, Price EV, Gill S., Javaid S., Coletti ME, Jones VL, Bodycombe NE, Soule CK, Alexander B., Li A., Montgomery P., Kotz JD, Hon CS, Munoz B., Liefeld T., Dančík V., Haber DA, et al. Nature chemical biology, 2015/12/14, (2015) Read More / View Supplemental Materials
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Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers.Zhang, X., Choi PS, Francis JM, Imielinski M., Watanabe H., Cherniack AD, and Meyerson M. Nature genetics, 2015/12/14, (2015) Read More / View Supplemental Materials
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TERT promoter mutations and monoallelic activation of TERT in cancer.Huang, FW, Bielski CM, Rinne ML, Hahn WC, Sellers WR, Stegmeier F., Garraway LA, and Kryukov GV Oncogenesis, 2015/12/14, Volume 4, p.e176, (2015) Read More / View Supplemental Materials
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