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Nat Commun DOI:10.1038/ncomms11589

Clonal evolution in patients with chronic lymphocytic leukaemia developing resistance to BTK inhibition.

Publication TypeJournal Article
Year of Publication2016
AuthorsBurger, JA, Landau, DA, Taylor-Weiner, A, Bozic, I, Zhang, H, Sarosiek, K, Wang, L, Stewart, C, Fan, J, Hoellenriegel, J, Sivina, M, Dubuc, AM, Fraser, C, Han, Y, Li, S, Livak, KJ, Zou, L, Wan, Y, Konoplev, S, Sougnez, C, Brown, JR, Abruzzo, LV, Carter, SL, Keating, MJ, Davids, MS, Wierda, WG, Cibulskis, K, Zenz, T, Werner, L, Dal Cin, P, Kharchencko, P, Neuberg, D, Kantarjian, H, Lander, E, Gabriel, S, O'Brien, S, Letai, A, Weitz, DA, Nowak, MA, Getz, G, Wu, CJ
JournalNat Commun
Volume7
Pages11589
Date Published2016 May 20
ISSN2041-1723
Abstract

Resistance to the Bruton's tyrosine kinase (BTK) inhibitor ibrutinib has been attributed solely to mutations in BTK and related pathway molecules. Using whole-exome and deep-targeted sequencing, we dissect evolution of ibrutinib resistance in serial samples from five chronic lymphocytic leukaemia patients. In two patients, we detect BTK-C481S mutation or multiple PLCG2 mutations. The other three patients exhibit an expansion of clones harbouring del(8p) with additional driver mutations (EP300, MLL2 and EIF2A), with one patient developing trans-differentiation into CD19-negative histiocytic sarcoma. Using droplet-microfluidic technology and growth kinetic analyses, we demonstrate the presence of ibrutinib-resistant subclones and estimate subclone size before treatment initiation. Haploinsufficiency of TRAIL-R, a consequence of del(8p), results in TRAIL insensitivity, which may contribute to ibrutinib resistance. These findings demonstrate that the ibrutinib therapy favours selection and expansion of rare subclones already present before ibrutinib treatment, and provide insight into the heterogeneity of genetic changes associated with ibrutinib resistance.

URLhttp://dx.doi.org/10.1038/ncomms11589
DOI10.1038/ncomms11589
Pubmed

http://www.ncbi.nlm.nih.gov/pubmed/27199251?dopt=Abstract

Alternate JournalNat Commun
PubMed ID27199251
PubMed Central IDPMC4876453
Grant ListP30 CA016672 / CA / NCI NIH HHS / United States
R01 CA155010 / CA / NCI NIH HHS / United States
R01 CA184922 / CA / NCI NIH HHS / United States
U10 CA180861 / CA / NCI NIH HHS / United States
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