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N Engl J Med DOI:10.1056/NEJMoa1502214

FTO Obesity Variant Circuitry and Adipocyte Browning in Humans.

Publication TypeJournal Article
Year of Publication2015
AuthorsClaussnitzer, M, Dankel, SN, Kim, K-H, Quon, G, Meuleman, W, Haugen, C, Glunk, V, Sousa, IS, Beaudry, JL, Puviindran, V, Abdennur, NA, Liu, J, Svensson, P-A, Hsu, Y-H, Drucker, DJ, Mellgren, G, Hui, C-C, Hauner, H, Kellis, M
JournalN Engl J Med
Date Published2015 Sep 03
KeywordsAdipocytes, Alleles, Alpha-Ketoglutarate-Dependent Dioxygenase FTO, Animals, Base Sequence, Clustered Regularly Interspaced Short Palindromic Repeats, Epigenomics, Gene Expression, Genetic Engineering, Humans, Mice, Mitochondria, Molecular Sequence Data, Obesity, Phenotype, Proteins, Risk, RNA Editing, Thermogenesis

BACKGROUND: Genomewide association studies can be used to identify disease-relevant genomic regions, but interpretation of the data is challenging. The FTO region harbors the strongest genetic association with obesity, yet the mechanistic basis of this association remains elusive.

METHODS: We examined epigenomic data, allelic activity, motif conservation, regulator expression, and gene coexpression patterns, with the aim of dissecting the regulatory circuitry and mechanistic basis of the association between the FTO region and obesity. We validated our predictions with the use of directed perturbations in samples from patients and from mice and with endogenous CRISPR-Cas9 genome editing in samples from patients.

RESULTS: Our data indicate that the FTO allele associated with obesity represses mitochondrial thermogenesis in adipocyte precursor cells in a tissue-autonomous manner. The rs1421085 T-to-C single-nucleotide variant disrupts a conserved motif for the ARID5B repressor, which leads to derepression of a potent preadipocyte enhancer and a doubling of IRX3 and IRX5 expression during early adipocyte differentiation. This results in a cell-autonomous developmental shift from energy-dissipating beige (brite) adipocytes to energy-storing white adipocytes, with a reduction in mitochondrial thermogenesis by a factor of 5, as well as an increase in lipid storage. Inhibition of Irx3 in adipose tissue in mice reduced body weight and increased energy dissipation without a change in physical activity or appetite. Knockdown of IRX3 or IRX5 in primary adipocytes from participants with the risk allele restored thermogenesis, increasing it by a factor of 7, and overexpression of these genes had the opposite effect in adipocytes from nonrisk-allele carriers. Repair of the ARID5B motif by CRISPR-Cas9 editing of rs1421085 in primary adipocytes from a patient with the risk allele restored IRX3 and IRX5 repression, activated browning expression programs, and restored thermogenesis, increasing it by a factor of 7.

CONCLUSIONS: Our results point to a pathway for adipocyte thermogenesis regulation involving ARID5B, rs1421085, IRX3, and IRX5, which, when manipulated, had pronounced pro-obesity and anti-obesity effects. (Funded by the German Research Center for Environmental Health and others.).


Alternate JournalN. Engl. J. Med.
PubMed ID26287746
PubMed Central IDPMC4959911
Grant ListR01 HG008155 / HG / NHGRI NIH HHS / United States
R01 HG004037 / HG / NHGRI NIH HHS / United States
R01HG004037 / HG / NHGRI NIH HHS / United States
R01HG008155 / HG / NHGRI NIH HHS / United States
/ / Canadian Institutes of Health Research / Canada
RC1 HG005334 / HG / NHGRI NIH HHS / United States
RC1HG005334 / HG / NHGRI NIH HHS / United States
R01GM113708 / GM / NIGMS NIH HHS / United States