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BMC Genomics DOI:10.1186/s12864-015-1660-8

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus.

Publication TypeJournal Article
Year of Publication2015
AuthorsPerlin, MH, Amselem, J, Fontanillas, E, San Toh, S, Chen, Z, Goldberg, J, Duplessis, S, Henrissat, B, Young, S, Zeng, Q, Aguileta, G, Petit, E, Badouin, H, Andrews, J, Razeeq, D, Gabaldón, T, Quesneville, H, Giraud, T, Hood, ME, Schultz, DJ, Cuomo, CA
JournalBMC Genomics
Volume16
Pages461
Date Published2015 Jun 16
ISSN1471-2164
KeywordsAnimals, Chromosome Mapping, Fungi, Gene Expression Profiling, Genome, Fungal, Host-Parasite Interactions, Lipase, Parasites, Peroxidases, Plant Diseases, Plants, Silene, Superoxide Dismutase, Transcriptome
Abstract

BACKGROUND: The genus Microbotryum includes plant pathogenic fungi afflicting a wide variety of hosts with anther smut disease. Microbotryum lychnidis-dioicae infects Silene latifolia and replaces host pollen with fungal spores, exhibiting biotrophy and necrosis associated with altering plant development.

RESULTS: We determined the haploid genome sequence for M. lychnidis-dioicae and analyzed whole transcriptome data from plant infections and other stages of the fungal lifecycle, revealing the inventory and expression level of genes that facilitate pathogenic growth. Compared to related fungi, an expanded number of major facilitator superfamily transporters and secretory lipases were detected; lipase gene expression was found to be altered by exposure to lipid compounds, which signaled a switch to dikaryotic, pathogenic growth. In addition, while enzymes to digest cellulose, xylan, xyloglucan, and highly substituted forms of pectin were absent, along with depletion of peroxidases and superoxide dismutases that protect the fungus from oxidative stress, the repertoire of glycosyltransferases and of enzymes that could manipulate host development has expanded. A total of 14% of the genome was categorized as repetitive sequences. Transposable elements have accumulated in mating-type chromosomal regions and were also associated across the genome with gene clusters of small secreted proteins, which may mediate host interactions.

CONCLUSIONS: The unique absence of enzyme classes for plant cell wall degradation and maintenance of enzymes that break down components of pollen tubes and flowers provides a striking example of biotrophic host adaptation.

URLhttp://www.biomedcentral.com/1471-2164/16/461
DOI10.1186/s12864-015-1660-8
Pubmed

http://www.ncbi.nlm.nih.gov/pubmed/26076695?dopt=Abstract

Alternate JournalBMC Genomics
PubMed ID26076695
PubMed Central IDPMC4469406