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Cancer Cell DOI:10.1016/j.ccell.2019.08.002

Passenger Hotspot Mutations in Cancer.

Publication TypeJournal Article
Year of Publication2019
AuthorsHess, JM, Bernards, A, Kim, J, Miller, M, Taylor-Weiner, A, Haradhvala, NJ, Lawrence, MS, Getz, G
JournalCancer Cell
Volume36
Issue3
Pages288-301.e14
Date Published2019 Sep 16
ISSN1878-3686
Abstract

Current statistical models for assessing hotspot significance do not properly account for variation in site-specific mutability, thereby yielding many false-positives. We thus (i) detail a Log-normal-Poisson (LNP) background model that accounts for this variability in a manner consistent with models of mutagenesis; (ii) use it to show that passenger hotspots arise from all common mutational processes; and (iii) apply it to a ∼10,000-patient cohort to nominate driver hotspots with far fewer false-positives compared with conventional methods. Overall, we show that many cancer hotspot mutations recurring at the same genomic site across multiple tumors are actually passenger events, recurring at inherently mutable genomic sites under no positive selection.

DOI10.1016/j.ccell.2019.08.002
Pubmed

http://www.ncbi.nlm.nih.gov/pubmed/31526759?dopt=Abstract

Alternate JournalCancer Cell
PubMed ID31526759