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Fast construction of FM-index for long sequence reads.
|Publication Type||Journal Article|
|Abstract||We present a new method to incrementally construct the FM-index for both short and long sequence reads, up to the size of a genome. It is the first algorithm that can build the index while implicitly sorting the sequences in the reverse (complement) lexicographical order without a separate sorting step. The implementation is among the fastest for indexing short reads and the only one that practically works for reads of averaged kilobases in length. Availability and implementation: https://github.com/lh3/ropebwt2 CONTACT: email@example.com.|
|Year of Publication||2014|
|Journal||Bioinformatics (Oxford, England)|
|Date Published (YYYY/MM/DD)||2014/08/08|