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Thorax DOI:10.1136/thoraxjnl-2018-211616

Extensive global movement of multidrug-resistant strains revealed by whole-genome analysis.

Publication TypeJournal Article
Year of Publication2019
AuthorsCohen, KA, Manson, AL, Abeel, T, Desjardins, CA, Chapman, SB, Hoffner, S, Birren, BW, Earl, AM
JournalThorax
Date Published2019 May 02
ISSN1468-3296
Abstract

BACKGROUND: While the international spread of multidrug-resistant (MDR) strains is an acknowledged public health threat, a broad and more comprehensive examination of the global spread of MDR-tuberculosis (TB) using whole-genome sequencing has not yet been performed.

METHODS: In a global dataset of 5310 . whole-genome sequences isolated from five continents, we performed a phylogenetic analysis to identify and characterise clades of MDR-TB with respect to geographic dispersion.

RESULTS: Extensive international dissemination of MDR-TB was observed, with identification of 32 migrant MDR-TB clades with descendants isolated in 17 unique countries. Relatively recent movement of strains from both Beijing and non-Beijing lineages indicated successful global spread of varied genetic backgrounds. Migrant MDR-TB clade members shared relatively recent common ancestry, with a median estimate of divergence of 13-27 years. Migrant extensively drug-resistant (XDR)-TB clades were not observed, although development of XDR-TB within migratory MDR-TB clades was common.

CONCLUSIONS: Application of genomic techniques to investigate global MDR migration patterns revealed extensive global spread of MDR clades between countries of varying TB burden. Further expansion of genomic studies to incorporate isolates from diverse global settings into a single analysis, as well as data sharing platforms that facilitate genomic data sharing across country lines, may allow for future epidemiological analyses to monitor for international transmission of MDR-TB. In addition, efforts to perform routine whole-genome sequencing on all newly identified , like in England, will serve to better our understanding of the transmission dynamics of MDR-TB globally.

DOI10.1136/thoraxjnl-2018-211616
Pubmed

http://www.ncbi.nlm.nih.gov/pubmed/31048508?dopt=Abstract

Alternate JournalThorax
PubMed ID31048508