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Proc IEEE Int Symp Biomed Imaging DOI:10.1109/ISBI.2013.6556621

AUTOMATED QUANTIFICATION OF ZEBRAFISH TAIL DEFORMATION FOR HIGH-THROUGHPUT DRUG SCREENING.

Publication TypeJournal Article
Year of Publication2013
AuthorsIshaq, O, Negri, J, Bray, M-A, Pacureanu, A, Peterson, RT, Wählby, C
JournalProc IEEE Int Symp Biomed Imaging
Pages902-905
Date Published2013
ISSN1945-7928
Abstract

Zebrafish (Danio rerio) is an important vertebrate model organism in biomedical research thanks to its ease of handling and translucent body, enabling in vivo imaging. Zebrafish embryos undergo spinal deformation upon exposure to chemical agents that inhibit DNA repair. Automated image-based quantification of spine deformation is therefore attractive for whole-organism based assays for use in early-phase drug discovery. We propose an automated method for accurate high-throughput measurement of tail deformations in multi-fish micro-plate wells. The method generates refined medial representations of partial tail-segments. Subsequently, these disjoint segments are analyzed and fused to generate complete tails. Based on estimated tail curvatures we reach a classification accuracy of 91% on individual animals as compared to known control treatment. This accuracy is increased to 95% when combining scores for fish in the same well.

DOI10.1109/ISBI.2013.6556621
Pubmed

http://www.ncbi.nlm.nih.gov/pubmed/24499782?dopt=Abstract

Alternate JournalProc IEEE Int Symp Biomed Imaging
PubMed ID24499782
PubMed Central IDPMC3909804
Grant ListR01 GM095672 / GM / NIGMS NIH HHS / United States