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Bioinformatics DOI:10.1093/bioinformatics/btt085

Nozzle: a report generation toolkit for data analysis pipelines.

Publication TypeJournal Article
Year of Publication2013
AuthorsGehlenborg, N, Noble, MS, Getz, G, Chin, L, Park, PJ
JournalBioinformatics
Volume29
Issue8
Pages1089-91
Date Published2013 Apr 15
ISSN1367-4811
KeywordsComputational Biology, Genomics, Humans, Neoplasms, Programming Languages, Software, User-Computer Interface, Workflow
Abstract

SUMMARY: We have developed Nozzle, an R package that provides an Application Programming Interface to generate HTML reports with dynamic user interface elements. Nozzle was designed to facilitate summarization and rapid browsing of complex results in data analysis pipelines where multiple analyses are performed frequently on big datasets. The package can be applied to any project where user-friendly reports need to be created.

AVAILABILITY: The R package is available on CRAN at http://cran.r-project.org/package=Nozzle.R1. Examples and additional materials are available at http://gdac.broadinstitute.org/nozzle. The source code is also available at http://www.github.com/parklab/Nozzle.

SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

URLhttp://bioinformatics.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=23419376
DOI10.1093/bioinformatics/btt085
Pubmed

http://www.ncbi.nlm.nih.gov/pubmed/23419376?dopt=Abstract

Alternate JournalBioinformatics
PubMed ID23419376
PubMed Central IDPMC3624805
Grant ListU24 CA143845 / CA / NCI NIH HHS / United States
U24 CA143867 / CA / NCI NIH HHS / United States