A multi-omic atlas of the human frontal cortex for aging and Alzheimer's disease research.

Sci Data
Authors
Keywords
Abstract

We initiated the systematic profiling of the dorsolateral prefrontal cortex obtained from a subset of autopsied individuals enrolled in the Religious Orders Study (ROS) or the Rush Memory and Aging Project (MAP), which are jointly designed prospective studies of aging and dementia with detailed, longitudinal cognitive phenotyping during life and a quantitative, structured neuropathologic examination after death. They include over 3,322 subjects. Here, we outline the first generation of data including genome-wide genotypes (n=2,090), whole genome sequencing (n=1,179), DNA methylation (n=740), chromatin immunoprecipitation with sequencing using an anti-Histone 3 Lysine 9 acetylation (H3K9Ac) antibody (n=712), RNA sequencing (n=638), and miRNA profile (n=702). Generation of other omic data including ATACseq, proteomic and metabolomics profiles is ongoing. Thanks to its prospective design and recruitment of older, non-demented individuals, these data can be repurposed to investigate a large number of syndromic and quantitative neuroscience phenotypes. The many subjects that are cognitively non-impaired at death also offer insights into the biology of the human brain in older non-impaired individuals.

Year of Publication
2018
Journal
Sci Data
Volume
5
Pages
180142
Date Published
2018 08 07
ISSN
2052-4463
DOI
10.1038/sdata.2018.142
PubMed ID
30084846
PubMed Central ID
PMC6080491
Links
Grant list
RF1 AG036042 / AG / NIA NIH HHS / United States
U01 AG046152 / AG / NIA NIH HHS / United States
R01 AG042210 / AG / NIA NIH HHS / United States
RF1 AG015819 / AG / NIA NIH HHS / United States
K08 AG034290 / AG / NIA NIH HHS / United States
P50 AG016574 / AG / NIA NIH HHS / United States
K25 AG041906 / AG / NIA NIH HHS / United States
R01 AG030146 / AG / NIA NIH HHS / United States
R01 AG043617 / AG / NIA NIH HHS / United States
R01 AG017917 / AG / NIA NIH HHS / United States
KL2 RR024151 / RR / NCRR NIH HHS / United States
R01 AG036042 / AG / NIA NIH HHS / United States
P30 AG010161 / AG / NIA NIH HHS / United States
R01 AG032990 / AG / NIA NIH HHS / United States
RC2 AG036547 / AG / NIA NIH HHS / United States
R01 AG011101 / AG / NIA NIH HHS / United States
U01 ES017155 / ES / NIEHS NIH HHS / United States
R01 AG018023 / AG / NIA NIH HHS / United States
R01 AG036836 / AG / NIA NIH HHS / United States
R01 AG015819 / AG / NIA NIH HHS / United States