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Neuron DOI:10.1016/j.neuron.2022.09.025

In situ cell-type-specific cell-surface proteomic profiling in mice.

Publication TypeJournal Article
Year of Publication2022
AuthorsS Shuster, A, Li, J, Chon, UR, Sinantha-Hu, MC, Luginbuhl, DJ, Udeshi, ND, Carey, DKiki, Takeo, YH, Xie, Q, Xu, C, Mani, DR, Han, S, Ting, AY, Carr, SA, Luo, L
Date Published2022 Dec 07
KeywordsAnimals, Mammals, Mice, Proteomics

Cell-surface proteins (CSPs) mediate intercellular communication throughout the lives of multicellular organisms. However, there are no generalizable methods for quantitative CSP profiling in specific cell types in vertebrate tissues. Here, we present in situ cell-surface proteome extraction by extracellular labeling (iPEEL), a proximity labeling method in mice that enables spatiotemporally precise labeling of cell-surface proteomes in a cell-type-specific environment in native tissues for discovery proteomics. Applying iPEEL to developing and mature cerebellar Purkinje cells revealed differential enrichment in CSPs with post-translational protein processing and synaptic functions in the developing and mature cell-surface proteomes, respectively. A proteome-instructed in vivo loss-of-function screen identified a critical, multifaceted role for Armh4 in Purkinje cell dendrite morphogenesis. Armh4 overexpression also disrupts dendrite morphogenesis; this effect requires its conserved cytoplasmic domain and is augmented by disrupting its endocytosis. Our results highlight the utility of CSP profiling in native mammalian tissues for identifying regulators of cell-surface signaling.


Alternate JournalNeuron
PubMed ID36220098
PubMed Central IDPMC9742329
Grant ListR01 NS050835 / NS / NINDS NIH HHS / United States
R01 NS104698 / NS / NINDS NIH HHS / United States
R01 DK121409 / DK / NIDDK NIH HHS / United States
U24 CA210979 / CA / NCI NIH HHS / United States