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  • Showing 1-16 of 16 Results
2015
A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks.Parnas, O., Jovanovic M., Eisenhaure TM, Herbst RH, Dixit A., Ye CJ, Przybylski D., Platt RJ, Tirosh I., Sanjana NE, Shalem O., Satija R., Raychowdhury R., Mertins P., Carr SA, Zhang F., Hacohen N., and Regev A. Cell, 2015/07/30, Volume 162, Issue 3, p.675-86, (2015) Read More / View Supplemental Materials
Abstract
MERFISHing for spatial context.Shalek, AK, and Satija R. Trends in immunology, 2015/05/23, (2015) Read More / View Supplemental Materials
Abstract
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.Macosko, EZ, Basu A., Satija R., Nemesh J., Shekhar K., Goldman M., Tirosh I., Bialas AR, Kamitaki N., Martersteck EM, Trombetta JJ, Weitz DA, Sanes JR, Shalek AK, Regev A., and McCarroll SA Cell, 2015/05/21, Volume 161, Issue 5, p.1202-14, (2015) Read More / View Supplemental Materials
Abstract
Spatial reconstruction of single-cell gene expression data.Satija, R., Farrell JA, Gennert D., Schier AF, and Regev A. Nature biotechnology, 2015/05/01, Volume 33, Issue 5, p.495-502, (2015) Read More / View Supplemental Materials
Abstract
Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens.Jovanovic, M., Rooney MS, Mertins P., Przybylski D., Chevrier N., Satija R., Rodriguez EH, Fields AP, Schwartz S., Raychowdhury R., Mumbach MR, Eisenhaure T., Rabani M., Gennert D., Lu D., Delorey T., Weissman JS, Carr SA, Hacohen N., and Regev A. Science (New York, N.Y.), 2015/03/06, Volume 347, Issue 6226, p.1259038, (2015) Read More / View Supplemental Materials
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2014
Deconstructing transcriptional heterogeneity in pluripotent stem cells.Kumar, RM, Cahan P., Shalek AK, Satija R., DaleyKeyser AJ, Li H., Zhang J., Pardee K., Gennert D., Trombetta JJ, Ferrante TC, Regev A., Daley GQ, and Collins JJ Nature, 2014/12/04, Volume 516, Issue 7529, p.56-61, (2014) Read More / View Supplemental Materials
Abstract
Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA.Schwartz, S., Bernstein DA, Mumbach MR, Jovanovic M., Herbst RH, León-Ricardo BX, Engreitz JM, Guttman M., Satija R., Lander E. S., Fink G., and Regev A. Cell, 2014/09/10, (2014) Read More / View Supplemental Materials
Abstract
Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing.Trombetta, JJ, Gennert D., Lu D., Satija R., Shalek AK, and Regev A. Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.], 2014/07/01, Volume 107, p.4.22.1-4.22.17, (2014) Read More / View Supplemental Materials
Abstract
Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5' Sites.Schwartz, S., Mumbach MR, Jovanovic M., Wang T., Maciag K., Bushkin GG, Mertins P., Ter-Ovanesyan D., Habib N., Cacchiarelli D., Sanjana NE, Freinkman E., Pacold ME, Satija R., Mikkelsen TS, Hacohen N., Zhang F., Carr SA, Lander E. S., and Regev A. Cell reports, 2014/06/25, (2014) Read More / View Supplemental Materials
Abstract
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation.Shalek, AK, Satija R., Shuga J., Trombetta JJ, Gennert D., Lu D., Chen P., Gertner RS, Gaublomme JT, Yosef N., Schwartz S., Fowler B., Weaver S., Wang J., Wang X., Ding R., Raychowdhury R., Friedman N., Hacohen N., Park H., et al. Nature, 2014/06/19, Volume 509, Issue 7505, p.363-9, (2014) Read More / View Supplemental Materials
Abstract
Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer.Lohr, JG, Adalsteinsson VA, Cibulskis K., Choudhury AD, Rosenberg M., Cruz-Gordillo P., Francis JM, Zhang CZ, Shalek AK, Satija R., Trombetta JJ, Lu D., Tallapragada N., Tahirova N., Kim S., Blumenstiel B., Sougnez C., Lowe A., Wong B., Auclair D., et al. Nature biotechnology, 2014/05/01, Volume 32, Issue 5, p.479-84, (2014) Read More / View Supplemental Materials
Abstract
Heterogeneity in immune responses: from populations to single cells.Satija, R., and Shalek AK Trends in immunology, 2014/04/16, (2014) Read More / View Supplemental Materials
Abstract
2013
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis.Schwartz, S., Agarwala SD, Mumbach MR, Jovanovic M., Mertins P., Shishkin A., Tabach Y., Mikkelsen TS, Satija R., Ruvkun G., Carr SA, Lander E. S., Fink GR, and Regev A. Cell, 2013/12/05, Volume 155, Issue 6, p.1409-21, (2013) Read More / View Supplemental Materials
Abstract
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.Shalek, AK, Satija R., Adiconis X., Gertner RS, Gaublomme JT, Raychowdhury R., Schwartz S., Yosef N., Malboeuf C., Lu D., Trombetta JJ, Gennert D., Gnirke A., Goren A., Hacohen N., Levin JZ, Park H., and Regev A. Nature, 2013/06/13, Volume 498, Issue 7453, p.236-40, (2013) Read More / View Supplemental Materials
Abstract
Comparative analysis of RNA sequencing methods for degraded or low-input samples.Adiconis, X., Borges-Rivera D., Satija R., Deluca DS, Busby MA, Berlin AM, Sivachenko A., Thompson DA, Wysoker A., Fennell T., Gnirke A., Pochet N., Regev A., and Levin JZ Nature methods, 2013/05/19, (2013) Read More / View Supplemental Materials
Abstract
Dynamic regulatory network controlling TH17 cell differentiation.Yosef, N., Shalek AK, Gaublomme JT, Jin H., Lee Y., Awasthi A., Wu C., Karwacz K., Xiao S., Jorgolli M., Gennert D., Satija R., Shakya A., Lu DY, Trombetta JJ, Pillai MR, Ratcliffe PJ, Coleman ML, Bix M., Tantin D., et al. Nature, 2013/03/06, (2013) Read More / View Supplemental Materials
Abstract
  • Showing 1-16 of 16 Results