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2016
LIN28 Regulates Stem Cell Metabolism and Conversion to Primed Pluripotency.Zhang, J., Ratanasirintrawoot S., Chandrasekaran S., Wu Z., Ficarro SB, Yu C., Ross CA, Cacchiarelli D., Xia Q., Seligson M., Shinoda G., Xie W., Cahan P., Wang L., Ng SC, Tintara S., Trapnell C., Onder T., Loh YH, Mikkelsen T., et al. Cell stem cell, 2016/06/15, (2016) Read More / View Supplemental Materials
Abstract
RNAi Reveals Phase-Specific Global Regulators of Human Somatic Cell Reprogramming.Toh, CD, Chan JW, Chong ZS, Wang HF, Guo HC, Satapathy S., Ma D., Goh GY, Khattar E., Yang L., Tergaonkar V., Chang YT, Collins JJ, Daley GQ, Wee KB, Farran CA, Li H., Lim YP, Bard FA, and Loh YH Cell reports, 2016/06/08, (2016) Read More / View Supplemental Materials
Abstract
Chemogenomics and orthology-based design of antibiotic combination therapies.Chandrasekaran, S., Cokol-Cakmak M., Sahin N., Yilancioglu K., Kazan H., Collins JJ, and Cokol M. Molecular systems biology, 2016/05/24, Volume 12, Issue 5, p.872, (2016) Read More / View Supplemental Materials
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Comparison of Cas9 activators in multiple species.Chavez, A., Tuttle M., Pruitt BW, Ewen-Campen B., Chari R., Ter-Ovanesyan D., Haque SJ, Cecchi RJ, Kowal EJ, Buchthal J., Housden BE, Perrimon N., Collins JJ, and Church G. Nature methods, 2016/05/23, (2016) Read More / View Supplemental Materials
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Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components.Pardee, K., Green AA, Takahashi MK, Braff D., Lambert G., Lee JW, Ferrante T., Ma D., Donghia N., Fan M., Daringer NM, Bosch I., Dudley DM, O'Connor DH, Gehrke L., and Collins JJ Cell, 2016/05/06, (2016) Read More / View Supplemental Materials
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Targeted erythropoietin selectively stimulates red blood cell expansion in vivo.Burrill, DR, Vernet A., Collins JJ, Silver PA, and Way JC Proceedings of the National Academy of Sciences of the United States of America, 2016/04/25, (2016) Read More / View Supplemental Materials
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Engineering Models to Scale.Dy, AJ, and Collins JJ Cell, 2016/04/21, Volume 165, Issue 3, p.516-7, (2016) Read More / View Supplemental Materials
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Synthetic biology platform technologies for antimicrobial applications.Braff, D., Shis D., and Collins JJ Advanced drug delivery reviews, 2016/04/18, (2016) Read More / View Supplemental Materials
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A role for the bacterial GATC methylome in antibiotic stress survival.Cohen, NR, Ross CA, Jain S., Shapiro RS, Gutierrez A., Belenky P., Li H., and Collins JJ Nature genetics, 2016/03/21, (2016) Read More / View Supplemental Materials
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2015
Contributions of microbiome and mechanical deformation to intestinal bacterial overgrowth and inflammation in a human gut-on-a-chip.Kim, HJ, Li H., Collins JJ, and Ingber DE Proceedings of the National Academy of Sciences of the United States of America, 2015/12/14, (2015) Read More / View Supplemental Materials
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'Deadman' and 'Passcode' microbial kill switches for bacterial containment.Chan, CT, Lee JW, Cameron DE, Bashor CJ, and Collins JJ Nature chemical biology, 2015/12/07, (2015) Read More / View Supplemental Materials
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Synthetic biology devices for in vitro and in vivo diagnostics.Slomovic, S., Pardee K., and Collins JJ Proceedings of the National Academy of Sciences of the United States of America, 2015/11/24, Volume 112, Issue 47, p.14429-35, (2015) Read More / View Supplemental Materials
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Bactericidal Antibiotics Induce Toxic Metabolic Perturbations that Lead to Cellular Damage.Belenky, P., Ye JD, Porter CB, Cohen NR, Lobritz MA, Ferrante T., Jain S., Korry BJ, Schwarz EG, Walker GC, and Collins JJ Cell reports, 2015/11/03, Volume 13, Issue 5, p.968-80, (2015) Read More / View Supplemental Materials
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DNA sense-and-respond protein modules for mammalian cells.Slomovic, S., and Collins JJ Nature methods, 2015/09/21, (2015) Read More / View Supplemental Materials
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Systematic Identification of Factors for Provirus Silencing in Embryonic Stem Cells.Yang, BX, El Farran CA, Guo HC, Yu T., Fang HT, Wang HF, Schlesinger S., Seah YF, Goh GY, Neo SP, Li Y., Lorincz MC, Tergaonkar V., Lim TM, Chen L., Gunaratne J., Collins JJ, Goff SP, Daley GQ, Li H., et al. Cell, 2015/09/09, (2015) Read More / View Supplemental Materials
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Cas9 gRNA engineering for genome editing, activation and repression.Kiani, S., Chavez A., Tuttle M., Hall RN, Chari R., Ter-Ovanesyan D., Qian J., Pruitt BW, Beal J., Vora S., Buchthal J., Kowal EJ, Ebrahimkhani MR, Collins JJ, Weiss R., and Church G. Nature methods, 2015/09/07, (2015) Read More / View Supplemental Materials
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Antibiotic efficacy is linked to bacterial cellular respiration.Lobritz, MA, Belenky P., Porter CB, Gutierrez A., Yang JH, Schwarz EG, Dwyer DJ, Khalil AS, and Collins JJ Proceedings of the National Academy of Sciences of the United States of America, 2015/06/22, (2015) Read More / View Supplemental Materials
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Highly efficient Cas9-mediated transcriptional programming.Chavez, A., Scheiman J., Vora S., Pruitt BW, Tuttle M., P R Iyer E., Lin S., Kiani S., Guzman CD, Wiegand DJ, Ter-Ovanesyan D., Braff JL, Davidsohn N., Housden BE, Perrimon N., Weiss R., Aach J., Collins JJ, and Church GM Nature methods, 2015/03/02, (2015) Read More / View Supplemental Materials
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Chromatin regulation at the frontier of synthetic biology.Keung, AJ, Joung JK, Khalil AS, and Collins JJ Nature reviews. Genetics, 2015/03/01, Volume 16, Issue 3, p.159-71, (2015) Read More / View Supplemental Materials
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Boosting bacterial metabolism to combat antibiotic resistance.Bhargava, P., and Collins JJ Cell metabolism, 2015/02/03, Volume 21, Issue 2, p.154-5, (2015) Read More / View Supplemental Materials
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2014
Deconstructing transcriptional heterogeneity in pluripotent stem cells.Kumar, RM, Cahan P., Shalek AK, Satija R., DaleyKeyser AJ, Li H., Zhang J., Pardee K., Gennert D., Trombetta JJ, Ferrante TC, Regev A., Daley GQ, and Collins JJ Nature, 2014/12/04, Volume 516, Issue 7529, p.56-61, (2014) Read More / View Supplemental Materials
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2012
Wisdom of crowds for robust gene network inference.Marbach, D., Costello JC, Küffner R., Vega NM, Prill RJ, Camacho DM, Allison KR, The DREAM5 Consortium, Aderhold A., Allison KR, Bonneau R., Camacho DM, Chen Y., Collins JJ, Cordero F., Costello JC, Crane M., Dondelinger F., Drton M., Esposito R., et al. Nature methods, 2012/07/15, (2012) Read More / View Supplemental Materials
Abstract
  • Showing 1-22 of 22 Results