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2016
Genome Sequence of Spizellomyces punctatus.Russ, C., Lang BF, Chen Z., Gujja S., Shea T., Zeng Q., Young S., Cuomo CA, and Nusbaum C. Genome announcements, 2016/08/18, Volume 4, Issue 4, (2016) Read More / View Supplemental Materials
Abstract
Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome.Drees, KP, Palmer JM, Sebra R., Lorch JM, Chen C., Wu CC, Bok JW, Keller NP, Blehert DS, Cuomo CA, Lindner DL, and Foster JT Genome announcements, 2016/06/30, Volume 4, Issue 3, (2016) Read More / View Supplemental Materials
Abstract
Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans.Leach, MD, Farrer RA, Tan K., Miao Z., Walker LA, Cuomo CA, Wheeler RT, Brown AJ, Wong KH, and Cowen LE Nature communications, 2016/05/26, Volume 7, p.11704, (2016) Read More / View Supplemental Materials
Abstract
Intracellular Action of a Secreted Peptide Required for Fungal Virulence.Homer, CM, Summers DK, Goranov AI, Clarke SC, Wiesner DL, Diedrich JK, Moresco JJ, Toffaletti D., Upadhya R., Caradonna I., Petnic S., Pessino V., Cuomo CA, Lodge JK, Perfect J., Yates JR 3rd, Nielsen K., Craik CS, and Madhani HD Cell host & microbe, 2016/05/18, (2016) Read More / View Supplemental Materials
Abstract
Lower prevalence but similar fitness in a parasitic fungus at higher radiation levels near Chernobyl.Aguileta, G., Badouin H., Hood ME, Møller AP, Le Prieur S., Snirc A., Siguenza S., Mousseau TA, Shykoff JA, Cuomo CA, and Giraud T. Molecular ecology, 2016/05/02, (2016) Read More / View Supplemental Materials
Abstract
Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.Ma, L., Chen Z., Huang da W., Kutty G., Ishihara M., Wang H., Abouelleil A., Bishop L., Davey E., Deng R., Deng X., Fan L., Fantoni G., FitzGerald M., Gogineni E., Goldberg JM, Handley G., Hu X., Huber C., Jiao X., et al. Nature communications, 2016/02/22, Volume 7, p.10740, (2016) Read More / View Supplemental Materials
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2015
50 Years of Emmonsia Disease in Humans: The Dramatic Emergence of a Cluster of Novel Fungal Pathogens.Schwartz, IS, Kenyon C., Feng P., Govender NP, Dukik K., Sigler L., Jiang Y., Stielow JB, Muñoz JF, Cuomo CA, Botha A., Stchigel AM, and de Hoog GS PLoS pathogens, 2015/11/01, Volume 11, Issue 11, p.e1005198, (2015) Read More / View Supplemental Materials
The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia.Muñoz, JF, Gauthier GM, Desjardins CA, Gallo JE, Holder J., Sullivan TD, Marty AJ, Carmen JC, Chen Z., Ding L., Gujja S., Magrini V., Misas E., Mitreva M., Priest M., Saif S., Whiston EA, Young S., Zeng Q., Goldman WE, et al. PLoS genetics, 2015/10/01, Volume 11, Issue 10, p.e1005493, (2015) Read More / View Supplemental Materials
Abstract
Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii.Farrer, RA, Desjardins CA, Sakthikumar S., Gujja S., Saif S., Zeng Q., Chen Y., Voelz K., Heitman J., May RC, Fisher MC, and Cuomo CA mBio, 2015/09/01, Volume 6, Issue 5, (2015) Read More / View Supplemental Materials
Abstract
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus.Perlin, MH, Amselem J., Fontanillas E., Toh SS, Chen Z., Goldberg J., Duplessis S., Henrissat B., Young S., Zeng Q., Aguileta G., Petit E., Badouin H., Andrews J., Razeeq D., Gabaldón T., Quesneville H., Giraud T., Hood ME, Schultz DJ, et al. BMC genomics, 2015/06/16, Volume 16, Issue 1, p.461, (2015) Read More / View Supplemental Materials
Abstract
Contrasting host-pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes.Desjardins, CA, Sanscrainte ND, Goldberg JM, Heiman D., Young S., Zeng Q., Madhani HD, Becnel JJ, and Cuomo CA Nature communications, 2015/05/13, Volume 6, p.7121, (2015) Read More / View Supplemental Materials
Abstract
Genetic and phenotypic intra-species variation in Candida albicans.Hirakawa, MP, Martinez DA, Sakthikumar S., Anderson MZ, Berlin A., Gujja S., Zeng Q., Zisson E., Wang JM, Greenberg JM, Berman J., Bennett RJ, and Cuomo CA Genome research, 2015/03/01, Volume 25, Issue 3, p.413-25, (2015) Read More / View Supplemental Materials
Abstract
Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum.Cuomo, CA, Untereiner WA, Ma LJ, Grabherr M., and Birren BW Genome announcements, 2015/02/26, Volume 3, Issue 1, (2015) Read More / View Supplemental Materials
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2014
Genome update of the dimorphic human pathogenic fungi causing paracoccidioidomycosis.Muñoz, JF, Gallo JE, Misas E., Priest M., Imamovic A., Young S., Zeng Q., Clay OK, McEwen JG, and Cuomo CA PLoS neglected tropical diseases, 2014/12/01, Volume 8, Issue 12, p.e3348, (2014) Read More / View Supplemental Materials
Abstract
Genome Sequence of the Microsporidian Species Nematocida sp1 Strain ERTm6 (ATCC PRA-372).Bakowski, MA, Priest M., Young S., Cuomo CA, and Troemel ER Genome announcements, 2014/09/18, Volume 2, Issue 5, (2014) Read More / View Supplemental Materials
Abstract
Fungi on the Skin: Dermatophytes and Malassezia.White, TC, Findley K., Dawson TL Jr, Scheynius A., Boekhout T., Cuomo CA, Xu J., and Saunders CW Cold Spring Harbor perspectives in medicine, 2014/08/01, Volume 4, Issue 8, (2014) Read More / View Supplemental Materials
Abstract
Highly Recombinant VGII Cryptococcus gattii Population Develops Clonal Outbreak Clusters through both Sexual Macroevolution and Asexual Microevolution.Billmyre, RB, Croll D., Li W., Mieczkowski P., Carter DA, Cuomo CA, Kronstad JW, and Heitman J. mBio, 2014/07/29, Volume 5, Issue 4, (2014) Read More / View Supplemental Materials
Abstract
Analysis of a Food-Borne Fungal Pathogen Outbreak: Virulence and Genome of a Mucor circinelloides Isolate from Yogurt.Lee, SC, Billmyre RB, Li A., Carson S., Sykes SM, Huh EY, Mieczkowski P., Ko DC, Cuomo CA, and Heitman J. mBio, 2014/07/08, Volume 5, Issue 4, (2014) Read More / View Supplemental Materials
Abstract
Ubiquitin-mediated response to microsporidia and virus infection in C. elegans.Bakowski, MA, Desjardins CA, Smelkinson MG, Dunbar TL, Lopez-Moyado IF, Rifkin SA, Cuomo CA, and Troemel ER PLoS pathogens, 2014/06/01, Volume 10, Issue 6, p.e1004200, (2014) Read More / View Supplemental Materials
Abstract
Genome Sequence of the Pathogenic Fungus Sporothrix schenckii (ATCC 58251).Cuomo, CA, Rodriguez-Del Valle N., Perez-Sanchez L., Abouelleil A., Goldberg J., Young S., Zeng Q., and Birren BW Genome announcements, 2014/05/22, Volume 2, Issue 3, (2014) Read More / View Supplemental Materials
Abstract
Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.Janbon, G., Ormerod KL, Paulet D., Byrnes EJ 3rd, Yadav V., Chatterjee G., Mullapudi N., Hon CC, Billmyre RB, Brunel F., Bahn YS, Chen W., Chen Y., Goldberg J., Gujja S., Jones S., Kodira CD, Marra M., Mieczkowski PA, Schein JE, et al. PLoS genetics, 2014/04/01, Volume 10, Issue 4, p.e1004261, (2014) Read More / View Supplemental Materials
Abstract
Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat.Bruce, M., Neugebauer KA, Joly DL, Migeon P., Cuomo CA, Wang S., Akhunov E., Bakkeren G., Kolmer JA, and Fellers JP Frontiers in plant science, 2014/01/13, Volume 4, p.520, (2014) Read More / View Supplemental Materials
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Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes.Upadhyaya, NM, Garnica DP, Karaoglu H., Sperschneider J., Nemri A., Xu B., Mago R., Cuomo CA, Rathjen JP, Park RF, Ellis JG, and Dodds PN Frontiers in plant science, 2014/01/01, Volume 5, p.759, (2014) Read More / View Supplemental Materials
Abstract
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Walker, BJ, Abeel T., Shea T., Priest M., Abouelliel A., Sakthikumar S., Cuomo CA, Zeng Q., Wortman J., Young SK, and Earl AM PloS one, 2014/01/01, Volume 9, Issue 11, p.e112963, (2014) Read More / View Supplemental Materials
Abstract
Standardized metadata for human pathogen/vector genomic sequences.Dugan, VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I., Ward DV, Yao A., Zheng J., Barrett T., Birren B., Brinkac L., Bruno VM, Caler E., Chapman S., et al. PloS one, 2014/01/01, Volume 9, Issue 6, p.e99979, (2014) Read More / View Supplemental Materials
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2013
Isolation of Blastomyces dermatitidis yeast from lung tissue during murine infection for in vivo transcriptional profiling.Marty, AJ, Wüthrich M., Carmen JC, Sullivan TD, Klein BS, Cuomo CA, and Gauthier GM Fungal genetics and biology : FG & B, 2013/07/01, Volume 56, p.1-8, (2013) Read More / View Supplemental Materials
Abstract
Complete genome sequences from three genetically distinct strains reveal high intraspecies genetic diversity in the microsporidian Encephalitozoon cuniculi.Pombert, JF, Xu J., Smith DR, Heiman D., Young S., Cuomo CA, Weiss LM, and Keeling PJ Eukaryotic cell, 2013/04/01, Volume 12, Issue 4, p.503-11, (2013) Read More / View Supplemental Materials
Abstract
Identification of the mating-type (MAT) locus that controls sexual reproduction of Blastomyces dermatitidis.Li, W., Sullivan TD, Walton E., Averette AF, Sakthikumar S., Cuomo CA, Klein BS, and Heitman J. Eukaryotic cell, 2013/01/01, Volume 12, Issue 1, p.109-17, (2013) Read More / View Supplemental Materials
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2012
Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.Cuomo, CA, Desjardins CA, Bakowski MA, Goldberg J., Ma AT, Becnel JJ, Didier ES, Fan L., Heiman DI, Levin JZ, Young S., Zeng Q., and Troemel ER Genome research, 2012/12/01, Volume 22, Issue 12, p.2478-88, (2012) Read More / View Supplemental Materials
Abstract
Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade.Schloegel, LM, Toledo LF, Longcore JE, Greenspan SE, Vieira CA, Lee M., Zhao S., Wangen C., Ferreira CM, Hipolito M., Davies AJ, Cuomo CA, Daszak P., and James TY Molecular ecology, 2012/07/31, (2012) Read More / View Supplemental Materials
Abstract
The fungal genome initiative and lessons learned from genome sequencing.Cuomo, CA, and Birren BW Methods in enzymology, 2012/01/09, Volume 470, p.833-55, (2012) Read More / View Supplemental Materials
Abstract
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.D'Souza, CA, Kronstad JW, Taylor G., Warren R., Yuen M., Hu G., Jung WH, Sham A., Kidd SE, Tangen K., Lee N., Zeilmaker T., Sawkins J., McVicker G., Shah S., Gnerre S., Griggs A., Zeng Q., Bartlett K., Li W., et al. mBio, 2012/01/06, Volume 2, Issue 1, p.e00342-10, (2012) Read More / View Supplemental Materials
Abstract
Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection.Martinez, DA, Oliver BG, Gräser Y., Goldberg JM, Li W., Martinez-Rossi NM, Monod M., Shelest E., Barton RC, Birch E., Brakhage AA, Chen Z., Gurr SJ, Heiman D., Heitman J., Kosti I., Rossi A., Saif S., Samalova M., Saunders CW, et al. mBio, 2012/01/01, Volume 3, Issue 5, (2012) Read More / View Supplemental Materials
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2011
Approaches to Fungal Genome Annotation.Haas, BJ, Zeng Q., Pearson MD, Cuomo CA, and Wortman JR Mycology, 2011/10/03, Volume 2, Issue 3, p.118-141, (2011) Read More / View Supplemental Materials
Abstract
Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.Desjardins, CA, Champion MD, Holder JW, Muszewska A., Goldberg J., Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M., Gujja S., Heiman DI, Henn MR, Kodira CD, León-Narváez H., Longo LV, Ma LJ, Malavazi I., Matsuo AL, Morais FV, et al. PLoS genetics, 2011/10/01, Volume 7, Issue 10, p.e1002345, (2011) Read More / View Supplemental Materials
Abstract
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.Amselem, J., Cuomo CA, van Kan JA, Viaud M., Benito EP, Couloux A., Coutinho PM, de Vries RP, Dyer PS, Fillinger S., Fournier E., Gout L., Hahn M., Wincker P., Anthouard V., Chen Z., Danchin EG, Dasilva C., Güldener U., Henrissat B., et al. PLoS genetics, 2011/08/01, Volume 7, Issue 8, p.e1002230, (2011) Read More / View Supplemental Materials
Abstract
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens.Klosterman, SJ, Subbarao KV, Kang S., Veronese P., Gold SE, Thomma BP, Chen Z., Henrissat B., Lee YH, Park J., Garcia-Pedrajas MD, Barbara DJ, Anchieta A., de Jonge R., Santhanam P., Maruthachalam K., Atallah Z., Amyotte SG, Paz Z., Inderbitzin P., et al. PLoS pathogens, 2011/07/01, Volume 7, Issue 7, p.e1002137, (2011) Read More / View Supplemental Materials
Abstract
Obligate biotrophy features unraveled by the genomic analysis of rust fungi.Duplessis, S., Cuomo CA, Lin YC, Aerts A., Tisserant E., Veneault-Fourrey C., Joly DL, Hacquard S., Amselem J., Cantarel BL, Chiu R., Coutinho PM, Feau N., Field M., Frey P., Gelhaye E., Goldberg J., Grabherr MG, Kodira CD, Kohler A., et al. Proceedings of the National Academy of Sciences of the United States of America, 2011/05/31, Volume 108, Issue 22, p.9166-71, (2011) Read More / View Supplemental Materials
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2010
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.Ma, LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A., Dufresne M., Freitag M., Grabherr M., Henrissat B., Houterman PM, Kang S., Shim WB, Woloshuk C., Xie X., Xu JR, Antoniw J., Baker SE, Bluhm BH, Breakspear A., et al. Nature, 2010/03/18, Volume 464, Issue 7287, p.367-73, (2010) Read More / View Supplemental Materials
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2009
Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication.Ma, LJ, Ibrahim AS, Skory C., Grabherr MG, Burger G., Butler M., Elias M., Idnurm A., Lang BF, Sone T., Abe A., Calvo SE, Corrochano LM, Engels R., Fu J., Hansberg W., Kim JM, Kodira CD, Koehrsen MJ, Liu B., et al. PLoS genetics, 2009/07/01, Volume 5, Issue 7, p.e1000549, (2009) Read More / View Supplemental Materials
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Evolution of pathogenicity and sexual reproduction in eight Candida genomes.Butler, G., Rasmussen MD, Lin MF, Santos MA, Sakthikumar S., Munro CA, Rheinbay E., Grabherr M., Forche A., Reedy JL, Agrafioti I., Arnaud MB, Bates S., Brown AJ, Brunke S., Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D., Hoyer LL, et al. Nature, 2009/06/04, Volume 459, Issue 7247, p.657-62, (2009) Read More / View Supplemental Materials
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2007
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.Cuomo, CA, Güldener U., Xu JR, Trail F., Turgeon BG, Di Pietro A., Walton JD, Ma LJ, Baker SE, Rep M., Adam G., Antoniw J., Baldwin T., Calvo S., Chang YL, DeCaprio D., Gale LR, Gnerre S., Goswami RS, Hammond-Kosack K., et al. Science (New York, N.Y.), 2007/09/07, Volume 317, Issue 5843, p.1400-2, (2007) Read More / View Supplemental Materials
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2006
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.Zody, MC, Garber M., Adams DJ, Sharpe T., Harrow J., Lupski JR, Nicholson C., Searle SM, Wilming L., Young SK, Abouelleil A., Allen NR, Bi W., Bloom T., Borowsky ML, Bugalter BE, Butler J., Chang JL, Chen CK, Cook A., et al. Nature, 2006/04/20, Volume 440, Issue 7087, p.1045-9, (2006) Read More / View Supplemental Materials
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Analysis of the DNA sequence and duplication history of human chromosome 15.Zody, MC, Garber M., Sharpe T., Young SK, Rowen L., O'Neill K., Whittaker CA, Kamal M., Chang JL, Cuomo CA, Dewar K., FitzGerald MG, Kodira CD, Madan A., Qin S., Yang X., Abbasi N., Abouelleil A., Arachchi HM, Baradarani L., et al. Nature, 2006/03/30, Volume 440, Issue 7084, p.671-5, (2006) Read More / View Supplemental Materials
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Human chromosome 11 DNA sequence and analysis including novel gene identification.Taylor, TD, Noguchi H., Totoki Y., Toyoda A., Kuroki Y., Dewar K., Lloyd C., Itoh T., Takeda T., Kim DW, She X., Barlow KF, Bloom T., Bruford E., Chang JL, Cuomo CA, Eichler E., FitzGerald MG, Jaffe DB, LaButti K., et al. Nature, 2006/03/23, Volume 440, Issue 7083, p.497-500, (2006) Read More / View Supplemental Materials
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DNA sequence and analysis of human chromosome 8.Nusbaum, C., Mikkelsen TS, Zody MC, Asakawa S., Taudien S., Garber M., Kodira CD, Schueler MG, Shimizu A., Whittaker CA, Chang JL, Cuomo CA, Dewar K., FitzGerald MG, Yang X., Allen NR, Anderson S., Asakawa T., Blechschmidt K., Bloom T., et al. Nature, 2006/01/19, Volume 439, Issue 7074, p.331-5, (2006) Read More / View Supplemental Materials
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2005
Genomics of the fungal kingdom: insights into eukaryotic biology.Galagan, JE, Henn MR, Ma LJ, Cuomo CA, and Birren B. Genome research, 2005/12/01, Volume 15, Issue 12, p.1620-31, (2005) Read More / View Supplemental Materials
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DNA sequence and analysis of human chromosome 18.Nusbaum, C., Zody MC, Borowsky ML, Kamal M., Kodira CD, Taylor TD, Whittaker CA, Chang JL, Cuomo CA, Dewar K., FitzGerald MG, Yang X., Abouelleil A., Allen NR, Anderson S., Bloom T., Bugalter B., Butler J., Cook A., DeCaprio D., et al. Nature, 2005/09/22, Volume 437, Issue 7058, p.551-5, (2005) Read More / View Supplemental Materials
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  • Showing 1-48 of 48 Results