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  • Showing 1-20 of 20 Results
2016
Genomic insights into the Ixodes scapularis tick vector of Lyme disease.Gulia-Nuss, M., Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J., Ribeiro JM, Megy K., Thimmapuram J., Miller JR, Walenz BP, Koren S., Hostetler JB, Thiagarajan M., Joardar VS, Hannick LI, Bidwell S., Hammond MP, et al. Nature communications, 2016/02/09, Volume 7, p.10507, (2016) Read More / View Supplemental Materials
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2015
Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.Andersen, KG, Shapiro BJ, Matranga CB, Sealfon R., Lin AE, Moses LM, Folarin OA, Goba A., Odia I., Ehiane PE, Momoh M., England EM, Winnicki S., Branco LM, Gire SK, Phelan E., Tariyal R., Tewhey R., Omoniwa O., Fullah M., et al. Cell, 2015/08/13, Volume 162, Issue 4, p.738-50, (2015) Read More / View Supplemental Materials
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2014
16S rRNA gene survey of microbial communities in Winogradsky columns.Ward, DV, and Birren B. PloS one, 2014/01/01, Volume 9, Issue 8, p.e104134, (2014) Read More / View Supplemental Materials
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Standardized metadata for human pathogen/vector genomic sequences.Dugan, VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I., Ward DV, Yao A., Zheng J., Barrett T., Birren B., Brinkac L., Bruno VM, Caler E., Chapman S., et al. PloS one, 2014/01/01, Volume 9, Issue 6, p.e99979, (2014) Read More / View Supplemental Materials
Abstract
2013
Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains.Lebreton, F., McGuire AM, Godfrey P., Griggs A., Cheng L., Saif S., Young S., Zeng Q., Wortman J., Birren B., Earl AM, and Gilmore MS mBio, 2013/08/20, Volume 4, Issue 4, (2013) Read More / View Supplemental Materials
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2012
Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus.Palmer, KL, Godfrey P., Griggs A., Kos VN, Zucker J., Desjardins C., Cerqueira G., Gevers D., Walker S., Wortman J., Feldgarden M., Haas B., Birren B., and Gilmore MS mBio, 2012/01/01, Volume 3, Issue 1, p.e00318-11, (2012) Read More / View Supplemental Materials
Abstract
Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.Kos, VN, Desjardins CA, Griggs A., Cerqueira G., Holden MT, Godfrey P., Palmer KL, Wortman J., Feldgarden M., Haas BJ, Birren B., and Gilmore MS mBio, 2012/01/01, Volume 3, Issue 3, (2012) Read More / View Supplemental Materials
Abstract
Independent Large Scale Duplications in Multiple M. tuberculosis Lineages Overlapping the Same Genomic Region.Weiner, B., Gomez J., Victor TC, Warren RM, Sloutsky A., Plikaytis BB, Posey JE, van Helden PD, Gey van Pittius NC, Koehrsen M., Sisk P., Stolte C., White J., Gagneux S., Birren B., Hung D., Murray M., and Galagan J. PloS one, 2012/01/01, Volume 7, Issue 2, p.e26038, (2012) Read More / View Supplemental Materials
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2011
Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.Kellis, M., Patterson N., Birren B., Berger B., and Lander E. S. Journal of computational biology : a journal of computational molecular cell biology, 2011/12/08, Volume 11, Issue 2-3, p.319-55, (2011) Read More / View Supplemental Materials
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2010
Pathogenomics of Culex quinquefasciatus and meta-analysis of infection responses to diverse pathogens.Bartholomay, LC, Waterhouse RM, Mayhew GF, Campbell CL, Michel K., Zou Z., Ramirez JL, Das S., Arensburger P., Bryant B., Chapman SB, Dong Y., Erickson SM, Karunaratne SH, Kokoza V., Kodira CD, Pignatelli P., Shin SW, Vanlandingham DL, Atkinson PW, et al. Science (New York, N.Y.), 2010/10/01, Volume 330, Issue 6000, p.88-90, (2010) Read More / View Supplemental Materials
Abstract
Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics.Arensburger, P., Megy K., Waterhouse RM, Abrudan J., Amedeo P., Antelo B., Bartholomay L., Bidwell S., Caler E., Campbell CL, Campbell KS, Casola C., Castro MT, Chandramouliswaran I., Chapman SB, Christley S., Costas J., Eisenstadt E., Feschotte C., Fraser-Liggett C., et al. Science (New York, N.Y.), 2010/10/01, Volume 330, Issue 6000, p.86-8, (2010) Read More / View Supplemental Materials
Abstract
High-quality draft genome sequences of 28 Enterococcus sp. isolates.Palmer, KL, Carniol K., Manson JM, Heiman D., Shea T., Young S., Zeng Q., Gevers D., Feldgarden M., Birren B., and Gilmore MS Journal of bacteriology, 2010/05/01, Volume 192, Issue 9, p.2469-70, (2010) Read More / View Supplemental Materials
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2009
Genomics. Genome project standards in a new era of sequencing.Chain, PS, Grafham DV, Fulton RS, FitzGerald MG, Hostetler J., Muzny D., Ali J., Birren B., Bruce DC, Buhay C., Cole JR, Ding Y., Dugan S., Field D., Garrity GM, Gibbs R., Graves T., Shan C., Harrison SH, Highlander S., et al. Science (New York, N.Y.), 2009/10/09, Volume 326, Issue 5950, p.236-7, (2009) Read More / View Supplemental Materials
Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies.Champion, MD, Zeng Q., Nix EB, Nano FE, Keim P., Kodira CD, Borowsky M., Young S., Koehrsen M., Engels R., Pearson M., Howarth C., Larson L., White J., Alvarado L., Forsman M., Bearden SW, Sjöstedt A., Titball R., Michell SL, et al. PLoS pathogens, 2009/05/01, Volume 5, Issue 5, p.e1000459, (2009) Read More / View Supplemental Materials
Abstract
2008
Dynamics of Pseudomonas aeruginosa genome evolution.Mathee, K., Narasimhan G., Valdes C., Qiu X., Matewish JM, Koehrsen M., Rokas A., Yandava CN, Engels R., Zeng E., Olavarietta R., Doud M., Smith RS, Montgomery P., White JR, Godfrey PA, Kodira C., Birren B., Galagan JE, and Lory S. Proceedings of the National Academy of Sciences of the United States of America, 2008/02/26, Volume 105, Issue 8, p.3100-5, (2008) Read More / View Supplemental Materials
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2007
Genome sequence of Aedes aegypti, a major arbovirus vector.Nene, V., Wortman JR, Lawson D., Haas B., Kodira C., Tu ZJ, Loftus B., Xi Z., Megy K., Grabherr M., Ren Q., Zdobnov EM, Lobo NF, Campbell KS, Brown SE, Bonaldo MF, Zhu J., Sinkins SP, Hogenkamp DG, Amedeo P., et al. Science (New York, N.Y.), 2007/06/22, Volume 316, Issue 5832, p.1718-23, (2007) Read More / View Supplemental Materials
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2006
Genomic patterns of pathogen evolution revealed by comparison of Burkholderia pseudomallei, the causative agent of melioidosis, to avirulent Burkholderia thailandensis.Yu, Y., Kim HS, Chua HH, Lin CH, Sim SH, Lin D., Derr A., Engels R., DeShazer D., Birren B., Nierman WC, and Tan P. BMC microbiology, 2006/05/26, Volume 6, p.46, (2006) Read More / View Supplemental Materials
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2005
Genomics of the fungal kingdom: insights into eukaryotic biology.Galagan, JE, Henn MR, Ma LJ, Cuomo CA, and Birren B. Genome research, 2005/12/01, Volume 15, Issue 12, p.1620-31, (2005) Read More / View Supplemental Materials
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Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.Vinson, JP, Jaffe DB, O'Neill K., Karlsson EK, Stange-Thomann N., Anderson S., Mesirov J. P., Satoh N., Satou Y., Nusbaum C., Birren B., Galagan JE, and Lander E. S. Genome research, 2005/08/01, Volume 15, Issue 8, p.1127-35, (2005) Read More / View Supplemental Materials
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2004
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.Jaillon, O., Aury JM, Brunet F., Petit JL, Stange-Thomann N., Mauceli E., Bouneau L., Fischer C., Ozouf-Costaz C., Bernot A., Nicaud S., Jaffe D., Fisher S., Lutfalla G., Dossat C., Segurens B., Dasilva C., Salanoubat M., Levy M., Boudet N., et al. Nature, 2004/10/21, Volume 431, Issue 7011, p.946-57, (2004) Read More / View Supplemental Materials
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  • Showing 1-20 of 20 Results