FGI
“Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System.”, mBio, vol. 12, no. 6, p. e0231321, 2021. ,
“Phenotypic Characterization and Comparative Genomics of the Melanin-Producing Yeast Reveals a Distinct Stress Tolerance Profile and Reduced Ribosomal Genetic Content.”, J Fungi (Basel), vol. 7, no. 12, 2021. ,
“Diversity, multifaceted evolution, and facultative saprotrophism in the European Batrachochytrium salamandrivorans epidemic.”, Nat Commun, vol. 12, no. 1, p. 6688, 2021. ,
“Blastomycosis in Africa and the Middle East: A Comprehensive Review of Reported Cases and Reanalysis of Historical Isolates Based on Molecular Data.”, Clin Infect Dis, vol. 73, no. 7, pp. e1560-e1569, 2021. ,
“Diagnostic Allele-Specific PCR for the Identification of Clades.”, J Fungi (Basel), vol. 7, no. 9, 2021. ,
“Whole-genome sequencing of multiple isolates of Puccinia triticina reveals asexual lineages evolving by recurrent mutations.”, G3 (Bethesda), vol. 11, no. 9, 2021. ,
“Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic that Includes the Species Complex.”, Phytopathology, vol. 111, no. 7, pp. 1064-1079, 2021. ,
“Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris.”, Genetics, vol. 218, no. 1, 2021. ,
“Best practices on the differential expression analysis of multi-species RNA-seq.”, Genome Biol, vol. 22, no. 1, p. 121, 2021. ,
“Amoeba Predation of Cryptococcus neoformans Results in Pleiotropic Changes to Traits Associated with Virulence.”, mBio, vol. 12, no. 2, 2021. ,
“Genome-Wide Analysis of Experimentally Evolved Candida auris Reveals Multiple Novel Mechanisms of Multidrug Resistance.”, mBio, vol. 12, no. 2, 2021. ,
“Genomic insights into the host specific adaptation of the Pneumocystis genus.”, Commun Biol, vol. 4, no. 1, p. 305, 2021. ,
“Genomic epidemiology of a Cryptococcus neoformans case cluster in Glasgow, Scotland, 2018.”, Microb Genom, vol. 7, no. 3, 2021. ,
“Comparative genomics of white and opaque cell states supports an epigenetic mechanism of phenotypic switching in Candida albicans.”, G3 (Bethesda), vol. 11, no. 2, 2021. ,
“An oxindole efflux inhibitor potentiates azoles and impairs virulence in the fungal pathogen Candida auris.”, Nat Commun, vol. 11, no. 1, p. 6429, 2020. ,
“Experimental Evolution Identifies Adaptive Aneuploidy as a Mechanism of Fluconazole Resistance in Candida auris.”, Antimicrob Agents Chemother, vol. 65, no. 1, 2020. ,
Mutations in TAC1B: a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris.
“Mutations in TAC1B: a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris.”, mBio, vol. 11, no. 3, 2020. ,
“Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture.”, mBio, vol. 11, no. 3, 2020. ,
“Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses.”, mBio, vol. 11, no. 2, 2020. ,
“Genomic diversity of the human pathogen Paracoccidioides across the South American continent.”, Fungal Genet Biol, vol. 140, p. 103395, 2020. ,
“Tracking a Global Threat: a New Genotyping Method for Candida auris.”, mBio, vol. 11, no. 2, 2020. ,
“Diversity and Complexity of the Large Surface Protein Family in the Compacted Genomes of Multiple Species.”, mBio, vol. 11, no. 2, 2020. ,
“Human Blastomycosis in South Africa Caused by and sp. nov., 1967 to 2014.”, J Clin Microbiol, vol. 58, no. 3, 2020. ,
“Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase.”, Cell, vol. 180, no. 2, pp. 263-277.e20, 2020. ,
“Complete Genome Sequences for Two Clinical Isolates from Northern and Southern Vietnam.”, Microbiol Resour Announc, vol. 9, no. 2, 2020. ,
“Understanding the Emergence of Multidrug-Resistant : Using Whole-Genome Sequencing to Describe the Population Structure of Species Complex.”, Front Genet, vol. 11, p. 554, 2020. ,
“Landscape of gene expression variation of natural isolates of in response to biologically relevant stresses.”, Microb Genom, vol. 6, no. 1, 2020. ,
“A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands.”, mBio, vol. 10, no. 6, 2019. ,
“Identification of Candida auris by Use of the Updated Vitek 2 Yeast Identification System, Version 8.01: a Multilaboratory Evaluation Study.”, J Clin Microbiol, vol. 57, no. 11, 2019. ,
“Future-Proofing Your Genome Assembly for Reproducibility and Clarity.”, Microbiol Resour Announc, vol. 8, no. 36, 2019. ,
“Emergomyces: The global rise of new dimorphic fungal pathogens.”, PLoS Pathog, vol. 15, no. 9, p. e1007977, 2019. ,
“Genome Sequence for Candida albicans Clinical Oral Isolate 529L.”, Microbiol Resour Announc, vol. 8, no. 25, 2019. ,
“Genetic and Genomic Analyses Reveal Boundaries between Species Closely Related to Pathogens.”, mBio, vol. 10, no. 3, 2019. ,
“Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans.”, Nat Commun, vol. 10, no. 1, p. 1607, 2019. ,
“Genome Sequence of the Black Yeast Exophiala lecanii-corni.”, Microbiol Resour Announc, vol. 8, no. 10, 2019. ,
“Genetic Analysis of Implicates Hsp90 in Morphogenesis and Azole Tolerance and Cdr1 in Azole Resistance.”, MBio, vol. 10, no. 1, 2019. ,
“Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans.”, PLoS Pathog, vol. 15, no. 1, p. e1007528, 2019. ,
“ Recovered From Olive Trees () in Turkey Reveal Allopatry With African and South American Lineages.”, Front Cell Infect Microbiol, vol. 9, p. 384, 2019. ,
“Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species.”, Nat Commun, vol. 9, no. 1, p. 5346, 2018. ,
“Transcriptional Heterogeneity of VGII Compared with Non-VGII Lineages Underpins Key Pathogenicity Pathways.”, mSphere, vol. 3, no. 5, 2018. ,
“Phenotypic Variability Correlates with Clinical Outcome in Isolates Obtained from Botswanan HIV/AIDS Patients.”, mBio, vol. 9, no. 5, 2018. ,
“Genomic characterization of recurrent mold infections in thoracic transplant recipients.”, Transpl Infect Dis, vol. 20, no. 5, p. e12935, 2018. ,
“Pathways of Pathogenicity: Transcriptional Stages of Germination in the Fatal Fungal Pathogen .”, mSphere, vol. 3, no. 5, 2018. ,
“Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen.”, Proc Natl Acad Sci U S A, vol. 115, no. 37, pp. E8688-E8697, 2018. ,
“Author Correction: Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.”, Emerg Microbes Infect, vol. 7, no. 1, p. 104, 2018. ,
“Comparative Population Genomics Analysis of the Mammalian Fungal Pathogen .”, mBio, vol. 9, no. 3, 2018. ,
“Titan cells formation in Cryptococcus neoformans is finely tuned by environmental conditions and modulated by positive and negative genetic regulators.”, PLoS Pathog, vol. 14, no. 5, p. e1006982, 2018. ,
“Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen .”, Genetics, vol. 208, no. 4, pp. 1657-1669, 2018. ,
“Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.”, Emerg Microbes Infect, vol. 7, no. 1, p. 43, 2018. ,
“RNAi is a critical determinant of centromere evolution in closely related fungi.”, Proc Natl Acad Sci U S A, vol. 115, no. 12, pp. 3108-3113, 2018. ,
“Genomic Understanding of an Infectious Brain Disease from the Desert.”, G3 (Bethesda), vol. 8, no. 3, pp. 909-922, 2018. ,
“: An Intricate Dance of Anther Smut and Its Host.”, G3 (Bethesda), vol. 8, no. 2, pp. 505-518, 2018. ,
“Advances in Cryptococcus genomics: insights into the evolution of pathogenesis.”, Mem Inst Oswaldo Cruz, vol. 113, no. 7, p. e170473, 2018. ,
“Whole Genome Sequence of the Heterozygous Clinical Isolate 81-B-5.”, G3 (Bethesda), vol. 7, no. 9, pp. 2883-2889, 2017. ,
“Tracing Genetic Exchange and Biogeography of var. at the Global Population Level.”, Genetics, vol. 207, no. 1, pp. 327-346, 2017. ,
“Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination.”, PLoS Biol, vol. 15, no. 8, p. e2002527, 2017. ,
“Population genomics and the evolution of virulence in the fungal pathogen .”, Genome Res, vol. 27, no. 7, pp. 1207-1219, 2017. ,
“Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales).”, Mycoses, vol. 60, no. 5, pp. 296-309, 2017. ,
“Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi.”, Nat Commun, vol. 8, p. 14742, 2017. ,
“Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii.”, MBio, vol. 8, no. 2, 2017. ,
“Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).”, Stud Mycol, vol. 86, pp. 1-28, 2017. ,
“Paracoccidioides spp. catalases and their role in antioxidant defense against host defense responses.”, Fungal Genet Biol, vol. 100, pp. 22-32, 2017. ,
“Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci.”, G3 (Bethesda), vol. 7, no. 2, pp. 361-376, 2017. ,
“Zinc Cluster Transcription Factors Alter Virulence in Candida albicans.”, Genetics, vol. 205, no. 2, pp. 559-576, 2017. ,
“Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses.”, Clin Infect Dis, vol. 64, no. 2, pp. 134-140, 2017. ,
“Harnessing Whole Genome Sequencing in Medical Mycology.”, Curr Fungal Infect Rep, vol. 11, no. 2, pp. 52-59, 2017. ,
The Case for Adopting the "Species Complex" Nomenclature for the Etiologic Agents of Cryptococcosis.
“The Case for Adopting the "Species Complex" Nomenclature for the Etiologic Agents of Cryptococcosis.”, mSphere, vol. 2, no. 1, 2017. ,
“Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii.”, Philos Trans R Soc Lond B Biol Sci, vol. 371, no. 1709, 2016. ,
“A Multistate Toggle Switch Defines Fungal Cell Fates and Is Regulated by Synergistic Genetic Cues.”, PLoS Genet, vol. 12, no. 10, p. e1006353, 2016. ,
“Genome Sequence of Spizellomyces punctatus.”, Genome Announc, vol. 4, no. 4, 2016. ,
“Lower prevalence but similar fitness in a parasitic fungus at higher radiation levels near Chernobyl.”, Mol Ecol, vol. 25, no. 14, pp. 3370-83, 2016. ,
“Intracellular Action of a Secreted Peptide Required for Fungal Virulence.”, Cell Host Microbe, vol. 19, no. 6, pp. 849-64, 2016. ,
“Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans.”, Nat Commun, vol. 7, p. 11704, 2016. ,
“Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.”, Nat Commun, vol. 7, p. 10740, 2016. ,
“Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides.”, mSphere, vol. 1, no. 5, 2016. ,
“The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia.”, PLoS Genet, vol. 11, no. 10, p. e1005493, 2015. ,
“Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii.”, MBio, vol. 6, no. 5, pp. e00868-15, 2015. ,
“Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus.”, BMC Genomics, vol. 16, p. 461, 2015. ,
“Contrasting host-pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes.”, Nat Commun, vol. 6, p. 7121, 2015. ,
“Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi.”, Mol Biol Evol, vol. 32, no. 4, pp. 928-43, 2015. ,
“Finding a Missing Gene: EFG1 Regulates Morphogenesis in Candida tropicalis.”, G3 (Bethesda), vol. 5, no. 5, pp. 849-56, 2015. ,
“Genetic and phenotypic intra-species variation in Candida albicans.”, Genome Res, vol. 25, no. 3, pp. 413-25, 2015. ,
“Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum.”, Genome Announc, vol. 3, no. 1, 2015. ,
“The evolution of drug resistance in clinical isolates of Candida albicans.”, Elife, vol. 4, p. e00662, 2015. ,
“50 Years of Emmonsia Disease in Humans: The Dramatic Emergence of a Cluster of Novel Fungal Pathogens.”, PLoS Pathog, vol. 11, no. 11, p. e1005198, 2015. ,
“Genome update of the dimorphic human pathogenic fungi causing paracoccidioidomycosis.”, PLoS Negl Trop Dis, vol. 8, no. 12, p. e3348, 2014. ,
“Genome Sequence of the Microsporidian Species Nematocida sp1 Strain ERTm6 (ATCC PRA-372).”, Genome Announc, vol. 2, no. 5, 2014. ,
“Fungi on the skin: dermatophytes and Malassezia.”, Cold Spring Harb Perspect Med, vol. 4, no. 8, 2014. ,
“Highly recombinant VGII Cryptococcus gattii population develops clonal outbreak clusters through both sexual macroevolution and asexual microevolution.”, MBio, vol. 5, no. 4, pp. e01494-14, 2014. ,
“Analysis of a food-borne fungal pathogen outbreak: virulence and genome of a Mucor circinelloides isolate from yogurt.”, MBio, vol. 5, no. 4, pp. e01390-14, 2014. ,
“Ubiquitin-mediated response to microsporidia and virus infection in C. elegans.”, PLoS Pathog, vol. 10, no. 6, p. e1004200, 2014. ,
“Genome Sequence of the Pathogenic Fungus Sporothrix schenckii (ATCC 58251).”, Genome Announc, vol. 2, no. 3, 2014. ,
“Comparative genomic and transcriptomic analysis of wangiella dermatitidis, a major cause of phaeohyphomycosis and a model black yeast human pathogen.”, G3 (Bethesda), vol. 4, no. 4, pp. 561-78, 2014. ,
“Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.”, PLoS Genet, vol. 10, no. 4, p. e1004261, 2014. ,
“Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat.”, Front Plant Sci, vol. 4, p. 520, 2014. ,
“Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.”, PLoS One, vol. 9, no. 11, p. e112963, 2014. ,
“Isolation of Blastomyces dermatitidis yeast from lung tissue during murine infection for in vivo transcriptional profiling.”, Fungal Genet Biol, vol. 56, pp. 1-8, 2013. ,
“One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use.”, Phytopathology, vol. 103, no. 5, pp. 400-8, 2013. ,
“Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis.”, FASEB J, vol. 27, no. 5, pp. 1962-72, 2013. ,
“Complete genome sequences from three genetically distinct strains reveal high intraspecies genetic diversity in the microsporidian Encephalitozoon cuniculi.”, Eukaryot Cell, vol. 12, no. 4, pp. 503-11, 2013. ,
“Conserved loci of leaf and stem rust fungi of wheat share synteny interrupted by lineage-specific influx of repeat elements.”, BMC Genomics, vol. 14, p. 60, 2013. ,
“Identification of the mating-type (MAT) locus that controls sexual reproduction of Blastomyces dermatitidis.”, Eukaryot Cell, vol. 12, no. 1, pp. 109-17, 2013. ,
“Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.”, Genome Res, vol. 22, no. 12, pp. 2478-88, 2012. ,
“Linkage to the mating-type locus across the genus Microbotryum: insights into nonrecombining chromosomes.”, Evolution, vol. 66, no. 11, pp. 3519-33, 2012. ,
“Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade.”, Mol Ecol, vol. 21, no. 21, pp. 5162-77, 2012. ,
“Adaptation of the black yeast Wangiella dermatitidis to ionizing radiation: molecular and cellular mechanisms.”, PLoS One, vol. 7, no. 11, p. e48674, 2012. ,
“Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection.”, MBio, vol. 3, no. 5, pp. e00259-12, 2012. ,
“Approaches to Fungal Genome Annotation.”, Mycology, vol. 2, no. 3, pp. 118-141, 2011. ,
“Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.”, PLoS Genet, vol. 7, no. 10, p. e1002345, 2011. ,
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.
“Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.”, PLoS Genet, vol. 7, no. 8, p. e1002230, 2011. ,
“Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens.”, PLoS Pathog, vol. 7, no. 7, p. e1002137, 2011. ,
“Obligate biotrophy features unraveled by the genomic analysis of rust fungi.”, Proc Natl Acad Sci U S A, vol. 108, no. 22, pp. 9166-71, 2011. ,
“Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.”, MBio, vol. 2, no. 1, pp. e00342-10, 2011. ,
“SREB, a GATA transcription factor that directs disparate fates in Blastomyces dermatitidis including morphogenesis and siderophore biosynthesis.”, PLoS Pathog, vol. 6, no. 4, p. e1000846, 2010. ,
“Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.”, Nature, vol. 464, no. 7287, pp. 367-73, 2010. ,
“The fungal genome initiative and lessons learned from genome sequencing.”, Methods Enzymol, vol. 470, pp. 833-55, 2010. ,
“Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication.”, PLoS Genet, vol. 5, no. 7, p. e1000549, 2009. ,
“Evolution of pathogenicity and sexual reproduction in eight Candida genomes.”, Nature, vol. 459, no. 7247, pp. 657-62, 2009. ,
“The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.”, Science, vol. 317, no. 5843, pp. 1400-2, 2007. ,
“Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.”, Nature, vol. 438, no. 7071, pp. 1105-15, 2005. ,