FGI

Population genetics and microevolution of clinical Candida glabrata reveals recombinant sequence types and hyper-variation within mitochondrial genomes, virulence genes and drug-targets.

N. Helmstetter, Chybowska, A. D., Delaney, C., Dantas, A. D. S., Gifford, H., Wacker, T., Munro, C., Warris, A., Jones, B., Cuomo, C. A., Wilson, D., Ramage, G., and Farrer, R. A., “Population genetics and microevolution of clinical Candida glabrata reveals recombinant sequence types and hyper-variation within mitochondrial genomes, virulence genes and drug-targets.”, Genetics, 2022.PubMed Google Scholar DOI

M. Voorhies, Cohen, S., Shea, T. P., Petrus, S., Muñoz, J. F., Poplawski, S., Goldman, W. E., Michael, T. P., Cuomo, C. A., Sil, A., and Beyhan, S., “Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species.”, mBio, p. e0257421, 2022.PubMed Google Scholar DOI

C. -H. Yu, Sephton-Clark, P., Tenor, J. L., Toffaletti, D. L., Giamberardino, C., Haverkamp, M., Cuomo, C. A., and Perfect, J. R., “Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System.”, mBio, vol. 12, no. 6, p. e0231321, 2021.PubMed Google Scholar DOI

J. Romsdahl, Schultzhaus, Z., Cuomo, C. A., Dong, H., Abeyratne-Perera, H., Hervey, J., and Wang, Z., “Phenotypic Characterization and Comparative Genomics of the Melanin-Producing Yeast Reveals a Distinct Stress Tolerance Profile and Reduced Ribosomal Genetic Content.”, J Fungi (Basel), vol. 7, no. 12, 2021.PubMed Google Scholar DOI

J. M. Rybak, Barker, K. S., Muñoz, J. F., Parker, J. E., Ahmad, S., Mokaddas, E., Abdullah, A., Elhagracy, R. S., Kelly, S. L., Cuomo, C. A., and Rogers, D., “In vivo emergence of high-level resistance during treatment reveals the first identified mechanism of amphotericin B resistance in Candida auris.”, Clin Microbiol Infect, 2021.PubMed Google Scholar DOI

M. Kelly, Pasmans, F., Muñoz, J. F., Shea, T. P., Carranza, S., Cuomo, C. A., and Martel, A., “Diversity, multifaceted evolution, and facultative saprotrophism in the European Batrachochytrium salamandrivorans epidemic.”, Nat Commun, vol. 12, no. 1, p. 6688, 2021.PubMed Google Scholar DOI

I. S. Schwartz, Muñoz, J. F., Kenyon, C. R., Govender, N. P., McTaggart, L., Maphanga, T. G., Richardson, S., Becker, P., Cuomo, C. A., McEwen, J. G., and Sigler, L., “Blastomycosis in Africa and the Middle East: A Comprehensive Review of Reported Cases and Reanalysis of Historical Isolates Based on Molecular Data.”, Clin Infect Dis, vol. 73, no. 7, pp. e1560-e1569, 2021.PubMed Google Scholar DOI

H. Carolus, Jacobs, S., Romero, C. L., Deparis, Q., Cuomo, C. A., Meis, J. F., and Van Dijck, P., “Diagnostic Allele-Specific PCR for the Identification of Clades.”, J Fungi (Basel), vol. 7, no. 9, 2021.PubMed Google Scholar DOI

J. P. Fellers, Sakthikumar, S., He, F., McRell, K., Bakkeren, G., Cuomo, C. A., and Kolmer, J. A., “Whole-genome sequencing of multiple isolates of Puccinia triticina reveals asexual lineages evolving by recurrent mutations.”, G3 (Bethesda), vol. 11, no. 9, 2021.PubMed Google Scholar DOI

D. M. Geiser, Al-Hatmi, A. M. S., Aoki, T., Arie, T., Balmas, V., Barnes, I., Bergstrom, G. C., Bhattacharyya, M. K., Blomquist, C. L., Bowden, R. L., Brankovics, B., Brown, D. W., Burgess, L. W., Bushley, K., Busman, M., Cano-Lira, J. F., Carrillo, J. D., Chang, H. -X., Chen, C. -Y., Chen, W., Chilvers, M., Chulze, S., Coleman, J. J., Cuomo, C. A., de Beer, W., de Hoog, S., Del Castillo-Múnera, J., Del Ponte, E. M., Dieguez-Uribeondo, J., Di Pietro, A., Edel-Hermann, V., Elmer, W. H., Epstein, L., Eskalen, A., Esposto, M. C., Everts, K. L., Fernández-Pavía, S. P., da Silva, G. F., Foroud, N. A., Fourie, G., Frandsen, R. J. N., Freeman, S., Freitag, M., Frenkel, O., Fuller, K. K., Gagkaeva, T., Gardiner, D. M., Glenn, A. E., Gold, S. E., Gordon, T. R., Gregory, N. F., Gryzenhout, M., Guarro, J., Gugino, B. K., Gutierrez, S., Hammond-Kosack, K. E., Harris, L. J., Homa, M., Hong, C. -F., Hornok, L., Huang, J. -W., Ilkit, M., Jacobs, A., Jacobs, K., Jiang, C., Jímenez-Gasco, M. D. M., Kang, S., Kasson, M. T., Kazan, K., Kennell, J. C., Kim, H. -S., Kistler, C., Kuldau, G. A., Kulik, T., Kurzai, O., Laraba, I., Laurence, M. H., Lee, T., Lee, Y. -W., Lee, Y. -H., Leslie, J. F., C Y Liew, E., Lofton, L. W., Logrieco, A. F., López-Berges, M. S., Luque, A. G., Lysøe, E., Ma, L. -J., Marra, R. E., Martin, F. N., May, S. R., McCormick, S. P., McGee, C., Meis, J. F., Migheli, Q., Nor, N. M. I. M., Monod, M., Moretti, A., Mostert, D., Mulé, G., Munaut, F., Munkvold, G. P., Nicholson, P., Nucci, M., O'donnell, K., Pasquali, M., Pfenning, L. H., Prigitano, A., Proctor, R. H., Ranque, S., Rehner, S. A., Rep, M., Rodríguez-Alvarado, G., Rose, L. J., Roth, M. G., Ruiz-Roldán, C., Saleh, A. A., Salleh, B., Sang, H., Scandiani, M. M., Scauflaire, J., Schmale, D. G., Short, D. P. G., Šišić, A., Smith, J. A., Smyth, C. W., Son, H., Spahr, E., Stajich, J. E., Steenkamp, E., Steinberg, C., Subramaniam, R., Suga, H., Summerell, B. A., Susca, A., Swett, C. L., Toomajian, C., Torres-Cruz, T. J., Tortorano, A. M., Urban, M., Vaillancourt, L. J., Vallad, G. E., van der Lee, T. A. J., Vanderpool, D., van Diepeningen, A. D., Vaughan, M. M., Venter, E., Vermeulen, M., Verweij, P. E., Viljoen, A., Waalwijk, C., Wallace, E. C., Walther, G., Wang, J., Ward, T. J., Wickes, B. L., Wiederhold, N. P., Wingfield, M. J., Wood, A. K. M., Xu, J. -R., Yang, X. -B., Yli-Mattila, T., Yun, S. -H., Zakaria, L., Zhang, H., Zhang, N., Zhang, S. X., and Zhang, X., “Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic that Includes the Species Complex.”, Phytopathology, vol. 111, no. 7, pp. 1064-1079, 2021.PubMed Google Scholar DOI