GSCID

Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species.

1.Google Scholar PubMed DOI

Voorhies M, Cohen S, Shea TP, et al. Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species. mBio. 2022:e0257421. doi:10.1128/mbio.02574-21.

Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System.

1.Google Scholar PubMed DOI

Yu C-H, Sephton-Clark P, Tenor JL, et al. Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System. mBio. 2021;12(6):e0231321. doi:10.1128/mBio.02313-21.

Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris.

1.Google Scholar PubMed DOI

Muñoz JF, Welsh RM, Shea T, et al. Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris. Genetics. 2021;218(1). doi:10.1093/genetics/iyab029.

Best practices on the differential expression analysis of multi-species RNA-seq.

1.Google Scholar PubMed DOI

Chung M, Bruno VM, Rasko DA, et al. Best practices on the differential expression analysis of multi-species RNA-seq. Genome Biol. 2021;22(1):121. doi:10.1186/s13059-021-02337-8.

Amoeba Predation of Cryptococcus neoformans Results in Pleiotropic Changes to Traits Associated with Virulence.

1.Google Scholar PubMed DOI

Fu MS, Liporagi-Lopes LC, Santos SRD, et al. Amoeba Predation of Cryptococcus neoformans Results in Pleiotropic Changes to Traits Associated with Virulence. mBio. 2021;12(2). doi:10.1128/mBio.00567-21.

Genome-Wide Analysis of Experimentally Evolved Candida auris Reveals Multiple Novel Mechanisms of Multidrug Resistance.

1.Google Scholar PubMed DOI

Carolus H, Pierson S, Muñoz JF, et al. Genome-Wide Analysis of Experimentally Evolved Candida auris Reveals Multiple Novel Mechanisms of Multidrug Resistance. mBio. 2021;12(2). doi:10.1128/mBio.03333-20.

Comparative genomics of white and opaque cell states supports an epigenetic mechanism of phenotypic switching in Candida albicans.

1.Google Scholar PubMed DOI

Beekman CN, Cuomo CA, Bennett RJ, Ene IV. Comparative genomics of white and opaque cell states supports an epigenetic mechanism of phenotypic switching in Candida albicans. G3 (Bethesda). 2021;11(2). doi:10.1093/g3journal/jkab001.

An oxindole efflux inhibitor potentiates azoles and impairs virulence in the fungal pathogen Candida auris.

1.Google Scholar PubMed DOI

Iyer KR, Camara K, Daniel-Ivad M, et al. An oxindole efflux inhibitor potentiates azoles and impairs virulence in the fungal pathogen Candida auris. Nat Commun. 2020;11(1):6429. doi:10.1038/s41467-020-20183-3.

Mutations in TAC1B: a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris.

1.Google Scholar PubMed DOI

Rybak JM, Muñoz JF, Barker KS, et al. Mutations in TAC1B: a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris. mBio. 2020;11(3). doi:10.1128/mBio.00365-20.

Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses.

1.Google Scholar PubMed DOI

Chow NA, Muñoz JF, Gade L, et al. Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses. mBio. 2020;11(2). doi:10.1128/mBio.03364-19.