Seal S, Carreras-Puigvert J, Singh S, Carpenter AE, Spjuth O, Bender A. From Pixels to Phenotypes: Integrating Image-Based Profiling with Cell Health Data Improves Interpretability. Molecular biology of the cell. 2024:mbcE23080298. doi:10.1091/mbc.E23-08-0298PubMedDOIGoogle Scholar
Imaging Platform
García-Ortegón M, Seal S, Singh S, Bender A, Bacallado S. Calibrated prediction of scarce adverse drug reaction labels with conditional neural processes,. In: 2024 Workshop on Data-Centric Machine Learning Research, International Conference of Machine Learning. bioRxiv; 2024. doi:10.1101/2024.06.07.598036DOIGoogle Scholar
Seal S, Trapotsi MA, Spjuth O, et al. Cell Painting: a decade of discovery and innovation in cellular imaging. Nature methods. 2024. doi:10.1038/s41592-024-02528-8PubMedDOIGoogle Scholar
Cimini BA. Creating and troubleshooting microscopy analysis workflows: Common challenges and common solutions. Journal of microscopy. 2024. doi:10.1111/jmi.13288PubMedDOIGoogle Scholar
De Niz M, García RE, Ramirez CT, et al. Building momentum through networks: Bioimaging across the Americas. Journal of microscopy. 2024. doi:10.1111/jmi.13318PubMedDOIGoogle Scholar
Tegtmeyer M, Arora J, Asgari S, et al. High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications. 2024;15(1):347. doi:10.1038/s41467-023-44045-wPubMedDOIGoogle Scholar
Weisbart E, Kumar A, Arevalo J, Carpenter AE, Cimini BA, Singh S. Cell Painting Gallery: an open resource for image-based profiling. Nature methods. 2024. doi:10.1038/s41592-024-02399-zPubMedDOIGoogle Scholar
van Dijk R, Arevalo J, Babadi M, Carpenter AE, Singh S. Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning. PLoS computational biology. 2024;20(11):e1012547. doi:10.1371/journal.pcbi.1012547PubMedDOIGoogle Scholar
Moshkov N, Bornholdt M, Benoit S, et al. Learning representations for image-based profiling of perturbations. Nature communications. 2024;15(1):1594. doi:10.1038/s41467-024-45999-1PubMedDOIGoogle Scholar
Carpenter AE, Singh S. Bringing computation to biology by bridging the last mile. Nature cell biology. 2024;26(1):5-7. doi:10.1038/s41556-023-01286-7PubMedDOIGoogle Scholar