Garcia-Fossa F, Cruz MC, Haghighi M, et al. Interpreting Image-based Profiles using Similarity Clustering and Single-Cell Visualization. Current protocols. 2023;3(3):e713. doi:10.1002/cpz1.713.PubMedGoogle ScholarDOI
Imaging
Wakui T, Negishi M, Murakami Y, et al. Predicting reprogramming-related gene expression from cell morphology in human induced pluripotent stem cells. Molecular biology of the cell. 2023;34(5):ar45. doi:10.1091/mbc.E22-06-0215.PubMedGoogle ScholarDOI
Dahlin JL, Hua BK, Zucconi BE, et al. Reference compounds for characterizing cellular injury in high-content cellular morphology assays. Nature communications. 2023;14(1):1364. doi:10.1038/s41467-023-36829-x.PubMedGoogle ScholarDOI
Berryer MH, Rizki G, Nathanson A, et al. High-content synaptic phenotyping in human cellular models reveals a role for BET proteins in synapse assembly. eLife. 2023;12. doi:10.7554/eLife.80168.PubMedGoogle ScholarDOI
Haghighi M, Caicedo JC, Cimini BA, Carpenter AE, Singh S. High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations. Nat Methods. 2022. doi:10.1038/s41592-022-01667-0.PubMedGoogle ScholarDOI
Rohban MH, Fuller AM, Tan C, et al. Virtual screening for small-molecule pathway regulators by image-profile matching. Cell Syst. 2022. doi:10.1016/j.cels.2022.08.003.PubMedGoogle ScholarDOI
Filby A, Carpenter AE. A New Image for Cell Sorting. N Engl J Med. 2022;386(18):1755-1758. doi:10.1056/NEJMcibr2200971.PubMedGoogle ScholarDOI
Chow YL, Singh S, Carpenter AE, Way GP. Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic. PLoS Comput Biol. 2022;18(2):e1009888. doi:10.1371/journal.pcbi.1009888.PubMedGoogle ScholarDOI
Bagheri N, Carpenter AE, Lundberg E, Plant AL, Horwitz R. The new era of quantitative cell imaging-challenges and opportunities. Mol Cell. 2022;82(2):241-247. doi:10.1016/j.molcel.2021.12.024.PubMedGoogle ScholarDOI
Lemmel S, Weckmann M, Wohlers A, et al. In vitro neutrophil migration is associated with inhaled corticosteroid treatment and serum cytokines in pediatric asthma. Front Pharmacol. 2022;13:1021317. doi:10.3389/fphar.2022.1021317.PubMedGoogle ScholarDOI