Spatial Technology Platform

Maurer K, Park CY, Mani S, et al. Coordinated Immune Cell Networks in the Bone Marrow Microenvironment Define the Graft versus Leukemia Response with Adoptive Cellular Therapy. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.09.579677DOIGoogle ScholarPubMed

Berryer MH, Tegtmeyer M, Binan L, et al. Robust induction of functional astrocytes using NGN2 expression in human pluripotent stem cells. iScience. 2023;26(7):106995. doi:10.1016/j.isci.2023.106995DOIGoogle ScholarPubMed

Bryan JP, Binan L, McCann C, Eldar YC, Farhi SL, Cleary B. Optimization-based decoding of Imaging Spatial Transcriptomics data. Bioinformatics (Oxford, England). 2023;39(6). doi:10.1093/bioinformatics/btad362DOIGoogle ScholarPubMed

Pietiläinen O, Trehan A, Meyer D, et al. Astrocytic cell adhesion genes linked to schizophrenia correlate with synaptic programs in neurons. Cell reports. 2023;42(1):111988. doi:10.1016/j.celrep.2022.111988DOIGoogle ScholarPubMed

Binan L, Danquah S, Valakh V, et al. Simultaneous CRISPR screening and spatial transcriptomics reveals intracellular, intercellular, and functional transcriptional circuits. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.11.30.569494DOIGoogle ScholarPubMed

Wang H, Huang R, Nelson J, et al. Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.12.07.570603DOIGoogle ScholarPubMed

Stogsdill JA, Kim K, Binan L, Farhi SL, Levin JZ, Arlotta P. Pyramidal neuron subtype diversity governs microglia states in the neocortex. Nature. 2022. doi:10.1038/s41586-022-05056-7DOIGoogle ScholarPubMed

Hwang WL, Jagadeesh KA, Guo JA, et al. Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment. Nat Genet. 2022. doi:10.1038/s41588-022-01134-8DOIGoogle ScholarPubMed

Nehme R, Pietilainen O, Artomov M, et al. The 22q11.2 region regulates presynaptic gene-products linked to schizophrenia. Nat Commun. 2022;13(1):3690. doi:10.1038/s41467-022-31436-8DOIGoogle ScholarPubMed

Schapiro D, Sokolov A, Yapp C, et al. MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging. Nature methods. 2022;19(3):311-315. doi:10.1038/s41592-021-01308-yDOIGoogle ScholarPubMed