Picard

Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. T

FireBrowse

User-friendly, web-based entry point to downloadable TCGA datasets, summary reports, and graphical tools.  FireBrowse sits atop TCGA GDAC Firehose, an application providing access to TCGA datasets and a robust selection of tools and pipelines for analyzing cancer genome data, as well as thousands of data analysis archives.

Mutsig

MutSig stands for "Mutation Significance".  MutSig analyzes lists of mutations discovered in DNA sequencing, to identify genes that were mutated more often than expected by chance given background mutation processes.

dRanger

dRanger is a tool to identify somatic rearrangements as clusters of aberrant paired-end sequencing reads in a tumor sample where the the normal sample has read-pairs consistent with the reference. Candidate rearrangement breakpoints from...

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