Documentation

SAMReadCodec

Decodes a simple SAM text string.

Category ROD Codecs


Overview

Reads in the SAM text version of a BAM file as a ROD. For testing only

See also: @see SAMTools for format specification

File format example

     SL-XBC:1:10:628:923#0	16	Escherichia_coli_K12	1	37	76M	=	1	0	AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGA	B@>87<;A@?@957:>>@AA@B>@A9AB@B>@A@@@@@A;=AAB@BBBBBCBBBB@>A>:ABB@BAABCB=CA@CB
 

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GATK version 3.3-0-g37228af built at 2014/10/24 14:40:51. GTD: NA