SnpEff

Top effect from SnpEff functional predictions

Category Variant Annotations

VCF Field INFO (variant-level)

Type RodRequiringAnnotation

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  • Overview

    This annotation processes the output of the SnpEff functional prediction tool to select only the predicted effect with the highest biological impact. The SnpEff output must be provided on the command line by specifying "--snpEffFile filename.vcf". See http://snpeff.sourceforge.net/ for more information about the SnpEff tool

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    Caveats

    • This annotation currently only supports output from SnpEff version 2.0.5.

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    See also Guide Index | Tool Documentation Index | Support Forum

    GATK version 3.3-0-g37228af built at 2014/10/24 14:40:51. GTD: NA