Root Mean Square of the mapping quality of reads across all samples.

Category Variant Annotations

VCF Field INFO (variant-level)

Type StandardAnnotation, ActiveRegionBasedAnnotation

Header info
  • INFO=

  • Overview

    This annotation provides an estimation of the overall mapping quality of reads supporting a variant call, averaged over all samples in a cohort.

    Statistical notes

    The root mean square is equivalent to the mean of the mapping qualities plus the standard deviation of the mapping qualities.

    Related annotations

    Return to top

    See also Guide Index | Tool Documentation Index | Support Forum

    GATK version 3.3-0-g37228af built at 2014/10/24 14:40:51. GTD: NA