Documentation

RMSMappingQuality

Root Mean Square of the mapping quality of reads across all samples.

Category Variant Annotations

VCF Field INFO (variant-level)

Type StandardAnnotation, ActiveRegionBasedAnnotation

Header info
  • INFO=

  • Overview

    This annotation provides an estimation of the overall mapping quality of reads supporting a variant call, averaged over all samples in a cohort.

    Statistical notes

    The root mean square is equivalent to the mean of the mapping qualities plus the standard deviation of the mapping qualities.

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    See also Guide Index | Tool Documentation Index | Support Forum

    GATK version 3.3-0-g37228af built at 2014/10/24 14:40:51. GTD: NA