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Created 2015-02-09 09:37:29 | Updated | Tags: website

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Dear Team, Just to let you know that the best practice page does not work properly in Firegfox. In https://www.broadinstitute.org/gatk/guide/best-practices When I click on the buttons DNAseq or RNAseq (to the right of Index), nothing occrs.

I'm using firefox version 35.0.1 in Ubuntu.

Best, Daniel

Created 2013-03-18 10:56:54 | Updated | Tags: depthofcoverage refseqcodec website

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Dear team,

I would like to include a RefSeq ROD file in order to get the coverage per gene using the GATK coverage tool (http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_coverage_DepthOfCoverage.html). However, it is not really clear to me how I can easily generate such a file, since I can not find the right documentation. All the links that should point to this information seem to be (incorrectly?) redirected to the main GATK homepage). For example this http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_utils_codecs_refseq_RefSeqCodec.html has a link that points to http://www.broadinstitute.org/gsa/wiki/index.php/RefSeq which is redirected to http://www.broadinstitute.org/gatk/. Can someone point me to the correct docs? Other resources I found also point to the same wiki, which I can't find at the moment..

Kind regards, JJ