Tagged with #simulatereadsforvariants
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Created 2012-07-23 23:56:52 | Updated 2012-07-23 23:56:52 | Tags: simulatereadsforvariants gatkdocs
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A new tool has been released!

Check out the documentation at SimulateReadsForVariants.

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Created 2015-04-29 10:27:03 | Updated | Tags: simulatereadsforvariants bam
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Dear list,

I would like to better understand how the module SimulateReadsForVariants is working with VCF files.

Given a VCF file containing 10 samples, I expected the SimulateReadsForVariants to simulate 10 BAM files for each sample. The module however simulates only 1 BAM file.

How can we generate sample-specific simulated BAM files?

Do we have to create 10 VCF files containing only 1 sample each?

Many thanks for your lights,

Best,

Rémi