Tagged with #simulatereadsforvariants
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Dear list,

I would like to better understand how the module SimulateReadsForVariants is working with VCF files.

Given a VCF file containing 10 samples, I expected the SimulateReadsForVariants to simulate 10 BAM files for each sample. The module however simulates only 1 BAM file.

How can we generate sample-specific simulated BAM files?

Do we have to create 10 VCF files containing only 1 sample each?

Many thanks for your lights,

Best,

Rémi