I would like to better understand how the module SimulateReadsForVariants is working with VCF files.
Given a VCF file containing 10 samples, I expected the SimulateReadsForVariants to simulate 10 BAM files for each sample. The module however simulates only 1 BAM file.
How can we generate sample-specific simulated BAM files?
Do we have to create 10 VCF files containing only 1 sample each?
Many thanks for your lights,