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Created 2014-03-11 08:10:55 | Updated | Tags: vcf bam rodwalker
Comments (3)

RodWalkers are really fast and great. Is there any way to connect a BAM file to it and get the pileup in the given positions? If not, what is the appropriate way to get pileups for a small set of selection positions?


Created 2014-02-07 16:02:40 | Updated | Tags: packaging development rodwalker
Comments (2)

Is there anyway to generate a jar file to execute a single walker that I wrote?


Created 2014-02-06 18:09:15 | Updated | Tags: developer rodwalker
Comments (7)

Is there anyway to write a sliding window RodWalker? I've been try to look in your documentation, but I have not found a clue.