Tagged with #readnamefilter
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Created 2014-05-08 14:01:44 | Updated | Tags: readnamefilter walkers
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I was trying to use GATK ReadNameFilter as suggested on January 22nd in this thread: http://gatkforums.broadinstitute.org/discussion/3141/unifiedgenotyper-error-somehow-the-requested-coordinate-is-not-covered-by-the-read

However, --help does not list a tool named ReadNameFilter and I get this error, when I try to use it:

ERROR A USER ERROR has occurred (version 3.1-1-g07a4bf8):
ERROR MESSAGE: Invalid command line: Malformed walker argument: Could not find walker with name: ReadNameFilter

Am I going mad and/or is there some simple explanation?