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Created 2013-01-10 10:02:45 | Updated 2013-01-10 10:03:54 | Tags: polyploid phylogeny
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Hello, I have 454 reads of loci on polyploid individuals. I am able to produce assemblies containing the different copies of one locus per individual. But I want to extract the reads corresponding to each copies, to then be able to produce phylogenies. Does the GATK can do something like this?

Thanks,