Tagged with #notprimaryalignmentfilter
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Created 2012-07-23 23:56:19 | Updated 2012-07-23 23:56:19 | Tags: notprimaryalignmentfilter gatkdocs
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A new tool has been released!

Check out the documentation at NotPrimaryAlignmentFilter.

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Created 2015-03-03 16:20:02 | Updated 2015-03-03 16:21:10 | Tags: duplicatereadfilter notprimaryalignmentfilter
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I have a quick question. What is the difference between DuplicateReadFilter and NotPrimaryAlignmentFilter? The documentation for each of them is identical; i.e.

Filter out duplicate reads.

Created 2013-09-18 05:08:04 | Updated | Tags: depthofcoverage notprimaryalignmentfilter
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Can someone point me to documentation on how I can run DepthOfCoverage without the NotPrimaryAlignmentFilter?