Tagged with #mapreduce
0 documentation articles | 0 announcements | 2 forum discussions

No posts found with the requested search criteria.
No posts found with the requested search criteria.

Created 2013-06-06 21:08:30 | Updated | Tags: commandlinegatk queue hadoop mapreduce google
Comments (8)

Hello, I`m new to GATK and Queue. I understand that we can write a QScript in Queue to generate separate GATK jobs and run them on a cluster of several nodes. Can we implement GATK or Queue on google hadoop?

Created 2013-05-28 04:23:04 | Updated | Tags: hadoop mapreduce process mr improvement
Comments (1)

I try to change I/O framework rather than internal framework(existing MapReduce and so on). I did try to change other tool in I/O framework, and that was finished successfully. I think GATK also can be changed in I/O framework adding MapReduce. You said to rewrite executive.* and traversals*. Am I just rewrite that frameworks only? I think this project is related gatk.io.*. (Surely, I/O process expend all framework.)

I have been analyze framework, CommandLineGATK -> CommandLineExecutable->GenomeAnalysisEngine->OutputTracker->ArgumentSource || Storage,Stub..