Tagged with #heterozygotes
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Created 2013-12-13 15:25:02 | Updated | Tags: haplotypecaller heterozygotes
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I am finding that HaplotypeCaller is calling heterozygotes when there is no evidence when you look in IGV. Is this still a known problem?

I am using version 2.8-1-g932cd3a. Attached are two screen shots in IGV where a heterozygotes is wrongly called: