Tagged with #gatk unifiedgenotyper bam limits
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Dear GATK Community, What is the limit to the number of bam files that can be added using the -I command in the UnifiedGenotyper? I have ~800 exomes that I would like to genotype simultaneously. Each bam is < 10 Mb. Combining all of them into one singe bam file is time consuming. How many bam files do you recommend, and how many samples/bam or Mb/bam? Thanks, Juan

Comments (1)

Dear GATK Community, What is the limit to the number of bam files that can be added using the -I command in the UnifiedGenotyper? I have ~800 exomes that I would like to genotype simultaneously. Each bam is < 10 Mb. Combining all of them into one singe bam file is time consuming. How many bam files do you recommend, and how many samples/bam or Mb/bam? Thanks, Juan