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Created 2015-08-16 17:49:42 | Updated | Tags: gatk2 galaxy

Comments (10)


I've trying to implement the best practice workflow on my local Galaxy instance, but there is a problem says that "Unable to access /please/GenomicsAnalysis.jar", anyone knows how to fix it?

Many thanks

Created 2014-08-20 11:42:34 | Updated | Tags: galaxy

Comments (4)

Hi GATK team, Congratulations for the very good work you are doing for the scientific community. I'll start to use GATK3 and I'd like to know if you are working or you know somebody working in the development of GATK3 wrappers for Galaxy.

Thank you very much, Fernanda

Created 2013-06-17 04:33:58 | Updated | Tags: unifiedgenotyper fastareference galaxy

Comments (7)

Dear GATK Users,

I am using GATK for first time. I am doing Targeted reseq Analysis. while i am running Unified Genotyper in Galaxy interface. it gives error message as mentioned below..

"ERROR MESSAGE: The fasta file you specified (/tmp/tmp-gatk-WBrGTf) does not exist." But i places the Fasta file path in .loc file. Also could anyone tell what are the preprocessing steps before using Bam file for Unified Genotyper??

Your answers are very much Appericiated.

Thanks Sridhar

Created 2012-09-21 12:01:37 | Updated 2013-01-07 20:39:12 | Tags: legacytools galaxy

Comments (13)

Hi, I want to run GATK in Galaxy and the required version is 1.4. Can you tell me where I can download this from? I've got the source for version 1.4 from github, so I can build it if need be, but I was wondering if there's a repository for older binaries. Many thanks, Graham