Tagged with #computeconfusionmatrix
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Created 2012-07-23 23:55:15 | Updated 2012-07-23 23:55:15 | Tags: computeconfusionmatrix gatkdocs
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A new tool has been released!

Check out the documentation at ComputeConfusionMatrix.

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Created 2013-11-07 14:25:18 | Updated | Tags: unifiedgenotyper bqsr computeconfusionmatrix
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I have a question regarding the BQSR param when running the UnifiedGenotyper. If I leave away that param, will there be a "default" confusion matrix applied for (single-sample) SNP calling?

Best, Cindy