Tagged with #basecoveragedistribution
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Created 2014-06-18 18:42:35 | Updated 2014-06-18 18:43:39 | Tags: bug basecoveragedistribution
Comments (5)

In some cases BaseCoverageDistribution takes ages to finish. I ran 4 BaseCoverageDistribution commands in parallel, and the smallest sample (by far) still is not finished while the others are. Seems like a bug to me? I will attach a screenshot.


Created 2013-06-26 17:38:55 | Updated 2013-06-26 17:42:50 | Tags: depthofcoverage gatkreport basecoveragedistribution
Comments (8)

In the output grp file,

#:GATKReport.v1.1:1
#:GATKTable:3:880:%s:%s:%s:;
#:GATKTable:BaseCoverageDistribution:A simplified GATK table report
Coverage  Count    Filtered
       0  2859049   2932784
       1   856997    837791
       2   288587    276253
       3    95618     91703

what's the meaning of the three columns?

Thanks,