Annotates variants that are composed of tandem repeats

Category Variant Annotations

VCF Field INFO (variant-level)

Type StandardAnnotation


This tool outputs the number of times the tandem repeat unit is repeated, for each allele (including reference).


This annotation is currently not compatible with HaplotypeCaller.

See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.2-2-gec30cee built at 2014/09/12 22:29:29. GTD: NA