SNP Map Table: C57BL/6J v.s. DBA/2J

Unassigned SNPs are included in the FTP tables

Chromosome
GenDist(avg)
FragmentSourceGenDist
SnpPosGt:C57BL/6JGt:DBA/2J
Chr1
4.4 P
16.MMHAP23FRF7.seqrandom4.4 P
66CT
149GT
5.5 P
36.MMHAP69FLD6.seqrandom6.6 P to 4.4 P
94AG
D1Mit242.1genetic marker5.5 P
62GA
6.05 F
15.MMHAP20FRE9.seqrandom5.5 F to 6.6 P
72AG
96TC
8.7 F
12.MMHAP31FLD3.seqrandom8.7 P to 8.7 F
79CT
15.85 F
13.MMHAP88FRE7.seqrandom15.3 F to 16.4 F
35TG
25.5124 F
46.MMHAP82FLH4.seqrandom25.1 F to 25.9248 F
70TC
32.8 F
28.MMHAP86FRB10.seqrandom32.8 F
119TG
33.9 F
18.MMHAP46FRF9.seqrandom33.9 F
34AC
34.2306 F
29.MMHAP15FLB5.seqrandom34.2306 F
23TC
64.5 F
02.MMHAP35FRA8.seqrandom64.5 F
38AT
103TC
67.8 F
D1Mit421.1genetic marker67.8 F
129CG
69.1245 F
MHAa67e10.seqrandom70.449 F to 67.8 F
130GT
173GA
69.9 F
28.MHAa65T_M13Rev.seqrandom69.9 F
131AG
73.2 P
07.MMHAP61FRC7.seqrandom73.2 P
117TG
20.MHAa96b8.seqrandom73.2 P
96TC
D1Mit31.1genetic marker73.2 P
26CT
74.3 F
D19405est73.2 F to 75.4 F
38AG
75.4 F
43.MMHAP26FRG10.seqrandom75.4 F
106AG
82.0 F
29.MMHAP6FRB11.seqrandom82.0 F
130GA
D1Mit266.1genetic marker82.0 F
23GA
D1Mit424.1genetic marker82.0 F
24GA
85.2 F
D1Mit57.1genetic marker85.2 F
26GA
85.2 P
D1Mit539.1genetic marker85.2 P
84CT
D1Mit539.2genetic marker85.2 P
25AG
91.8 F
24.MMHAP87FRH9.seqrandom91.8 F
70AG
31.MMHAP57FLC4.seqrandom91.8 F
61GA
94.0 F
X92969est94.0 F
36CT
50GA
91TC
101.6 F
21.MMHAP97FRG9.seqrandom101.6 F
66AG
113.7 F
X83202est113.7 F
23TC
Chr2
27.3 F
32.MMHAP4FLC5.seqrandom27.3 P to 27.3 F
98AC
31.7 F
41.MMHAP45FRF11.seqrandom31.7 F
137CT
38.3 F
37.MHAa90d1.seqrandom38.3 F
48GA
41.MMHAP25FRF11.seqrandom38.3 F
69GA
48.65 F
Z17804est49.2 P to 48.1 F
55TC
51.4 F
01.MMHAP6FLA1.seqrandom51.4 F
119GA
52.5 F
46.MMHAP59FLH4.seqrandom52.5 F
118AG
55.7 F
38.MMHAP33FRE11.seqrandom55.7 F
54TC
128GA
59.0 F
11.MMHAP44FRD8.seqrandom59.0 F
28GA
11.MMHAP87FRD8.seqrandom59.0 F
40AG
50CT
27.MMHAP25FLA6.seqrandom59.0 F
131TC
59.55 F
X80169est59.0 F to 60.1 F
81TC
60.1 F
D2Mit399.1genetic marker60.1 F
39TC
61.2 F
09.MMHAP61FLC3.seqrandom61.2 F
77CT
X01450est61.2 F
118AT
66.7 F
13.MMHAP61FRE7.seqrandom66.7 F
46CA
27.MMHAP59FLA6.seqrandom66.7 F
65AG
138AG
D2Mit404.1genetic marker66.7 F
24AG
70.58879 F
M55669est74.47758 P to 66.7 F
53GA
72.1 F
D2Mit284.4genetic marker72.1 F
51TA
59CT
74.3 P
U27177est74.3 P
177AG
78.15 F
26.MHAa77c2.seqrandom77.6 F to 78.7 F
42GA
78.7 F
36.MHAa91g12.seqrandom78.7 F
90TC
98.4 F
24.MMHAP91FLH3.seqrandom98.4 F
49TC
U09421est98.4 F
101TC
Chr3
2.2 F
M63554est2.2 F
158CT
4.4 F
45.MMHAP35FRG12.seqrandom4.4 P to 4.4 F
45CT
16.4 F
43.MMHAP97FRG10.seqrandom16.4 F
106GT
17.5 P
08.MMHAP18FRC8.seqrandom17.5 P
103CT
26.MMHAP20FRA11.seqrandom17.5 P
38TG
120CT
44.MMHAP7FLG5.seqrandom17.5 P
28GA
25.1 F
35.MMHAP59FLD5.seqrandom25.1 F
58AG
25.1 P
D3Mit52.2genetic marker25.1 P
65GA
29.5 P
D3Mit281.1genetic marker29.5 P
88GA
118CT
33.9 F
D3Mit28.2genetic marker33.9 F
27TC
U04541est33.9 F to 33.9 P
90AG
40.4 F
11.MMHAP11FLD2.seqrandom40.4 F
62AG
34.MMHAP22FRD10.seqrandom40.4 F
109TC
48.MMHAP22FRH12.seqrandom40.4 P to 40.4 F
56CA
41.5 F
M65034est41.5 F
27TC
79AC
49.2 F
D3Mit160.2genetic marker49.2 F
82GA
M63961est49.2 F
124AG
54.6 F
X61434est54.6 F
129TC
58.45 F
27.MMHAP69FRA12.seqrandom57.9 F to 59.0 F
66TG
Chr4
3.3 F
X61397est3.3 F
124AG
10.9 F
MHAa38d1.seqrandom10.9 F
133CT
30.6 P
17.MMHAP91FLF2.seqrandom30.6 P
20AG
126AT
31.7 F
33.MMHAP15FLC6.seqrandom31.7 F
87AT
X03687est31.7 F to 31.7 P
36TC
108TG
35 P
13.MMHAP64FLE1.seqrandom33.9 P to 36.1 P
30GA
81TA
45.9 F
MHAa54g5.seqrandom45.9 F
89AG
52.5 F
37.MMHAP88FRE10.seqrandom52.5 F
138TC
53.6 F
41.MMHAP25FLF5.seqrandom53.6 F
104TG
54.6 F
18.MMHAP82FLF3.seqrandom54.6 F
70AT
32.MMHAP11FLC5.seqrandom54.6 F
94GA
38.MMHAP34FLE5.seqrandom54.6 F
22CA
54AT
59.55 F
X61399est59.0 P to 60.1 F
110TC
60.1 F
D4Mit203.2genetic marker60.1 F
38GA
61.2 F
U51112est61.2 F
52CT
62.3 F
D4Mit339.2genetic marker62.3 F
87TC
124GA
140TC
71.0 P
21.MMHAP88FLG3.seqrandom71.0 P
57AG
27.MMHAP7FRA12.seqrandom71.0 P
64AG
42.MMHAP20FRF12.seqrandom71.0 P
105TA
Chr5
0.0 F
MHAa7d3.seqrandom0.0 F
39AT
112GT
131AT
3.85 F
29.MMHAP35FLB5.seqrandom3.3 F to 4.4 F
77AT
155AG
4.4 F
D5Mit179.1genetic marker4.4 F
46AC
5.5 F
36.MMHAP17FRD12.seqrandom5.5 F
67GA
85CA
157AG
16.95 F
06.MMHAP9FLB3.seqrandom16.4 F to 17.5 F
34GT
18.6 F
MHAa52c2.seqrandom18.6 F
100GA
121GA
25.1 F
33.MMHAP28FLC6.seqrandom25.1 F
122TC
27.3 F
D43963est27.3 F
80TC
160AG
32.8 P
M86829est32.8 P
60CT
128GA
37.75 F
L23801est37.2 P to 38.3 F
138AG
38.3 P
D5Mit115genetic marker38.3 P
33TA
48.65 F
08.MMHAP59FRC8.seqrandom48.1 F to 49.2 F
57AG
59.3702 F
16.MMHAP36FRF7.seqrandom57.9 F to 60.8404 F
20AG
112TC
Chr6
3.3 F
06.MMHAP84FRB9.seqrandom3.3 F to 3.3 P
64AG
M60493est3.3 F
110AG
MHAa74g5.seqrandom3.3 F
79GT
12.0 P
U20371est12.0 P
136TG
16.4 F
46.MMHAP28FRH10.seqrandom16.4 F
102TC
18.6 F
29.MHAa92c5.seqrandom18.6 F
21CT
36AT
32.MMHAP88FLC5.seqrandom18.6 F
49AG
31.7 F
28.MMHAP27FRB10.seqrandom31.7 F
34CG
40.4 P
X99043est40.4 P
24TC
41.5 P
23.MMHAP7FLH2.seqrandom41.5 P
117CT
42.6 F
44.MMHAP85FLG5.seqrandom41.5 F to 43.7 F
54CG
43.7 P
30.MMHAP25FRB12.seqrandom43.7 P
38TA
138GA
44.MMHAP27FRG11.seqrandom43.7 P
122CT
123CT
51.4 P
D6Mit13genetic marker51.4 P
118AG
62.85 F
37.MMHAP17FRE10.seqrandom62.3 F to 63.4 F
89AG
45.MMHAP94FRG12.seqrandom62.3 F to 63.4 F
21GA
93GA
63.4 F
35.MMHAP94FLD5.seqrandom63.4 F to 63.4 P
104CT
65.05 F
MHAa52a5.seqrandom63.4 P to 66.7 F
36CT
110CT
66.7 F
12.MMHAP34FLD3.seqrandom66.7 F
35AG
M23236est66.7 F to Tel
98TA
Chr7
5.5 F
13.MMHAP21FLE1.seqrandom5.5 F
138CG
12.0 F
MHAa20d2.seqrandom12.0 F
95CA
U01663est12.0 F
37AG
13.1 F
15.MMHAP34FLE3.seqrandom13.1 F
21AT
22.45 F
MHAa34e4.seqrandom21.9 F to 23.0 F
35TG
25.1 P
D7Mit195.2genetic marker25.1 P
67AG
26.2 F
04.MMHAP71FRB7.seqrandom26.2 F
111GA
117AG
139GA
33.MMHAP27FRC12.seqrandom26.2 F
77TG
MHAa54e9.seqrandom26.2 F
37CT
MHAa84e6.seqrandom26.2 F
105GT
116AG
29.5 F
36.MHAa92g12.seqrandom29.5 F
72CA
41.MMHAP76FLF5.seqrandom29.5 F
90TC
136CA
30.6 F
D63644est30.6 F
60CT
R74768est30.6 F
34CT
Results_ER_8_28_95_1___169.seqrandom30.6 F
23GT
48AG
33.9 F
13.MHAa56f1.seqrandom33.9 F
66TC
21.MMHAP61FLG3.seqrandom33.9 F
84AG
35.0 P
MHAa54h10.seqrandom35.0 P
57GA
37.2 F
26.MMHAP94FLA5.seqrandom37.2 F
55TC
63AG
75GA
37.2 P
17.MMHAP70FRF8.seqrandom37.2 P
178GA
40.95 F
41.MMHAP64FLF5.seqrandom39.3 F to 42.6 F
22AG
91TC
41.5 F
17.MMHAP44FLF2.seqrandom41.5 F
26TC
61CA
42.6 F
D18377est42.6 F
69CG
130CT
43.7 P
22.MMHAP75FRH7.seqrandom43.7 P
54AG
Chr8
4.4 F
44.MMHAP30FLG5.seqrandom4.4 F
75AG
82CA
101TC
17.1619 F
14.MMHAP27FRE8.seqrandom18.6 F to 15.7238 F
21GC
46GA
99AG
122GC
23.0 F
38.MMHAP16FLE5.seqrandom23.0 F
139CT
35.0 F
34.MMHAP86FLD4.seqrandom35.0 F
75TC
D8Mit145.1genetic marker35.0 F
45GA
X76654est35.0 F
37AG
35 F
24.MMHAP34FLH3.seqrandom35.0 F to 35.0 P
79GC
36.1 F
M23529est36.1 F
127GC
38.8 P
13.MMHAP80FLE1.seqrandom38.3 P to 39.3 P
26CA
39.3 F
15.MMHAP82FLE3.seqrandom39.3 F
117CT
Z49987est39.3 F
38TC
41.5 F
23.MMHAP27FRH8.seqrandom41.5 F to 41.5 P
106CT
128GA
U12919est41.5 F
36CT
42.6 F
20.MMHAP88FRG8.seqrandom42.6 P to 42.6 F
56GC
122AC
154AC
44.8 F
36.MMHAP61FRD12.seqrandom44.8 F
31TC
Chr9
4.4 P
17.MMHAP26FRF8.seqrandom4.4 P
66AT
19.MMHAP29FRG7.seqrandom4.4 P
31AG
12.0 F
26.MMHAP84FRA11.seqrandom12.0 F
132GA
29.MMHAP14FLB5.seqrandom12.0 F
33GC
17.5 F
D9Mit286.1genetic marker17.5 F
60AG
17.5 P
30.MMHAP9FRB12.seqrandom17.5 P
47GA
151AG
22.45 F
45.MMHAP28FLG6.seqrandom21.9 F to 23.0 P
128CT
33.9 P
D9Mit233.1genetic marker33.9 P
28GA
41.5 F
40.MMHAP66FLF4.seqrandom41.5 F
43GT
89TC
43.7 F
D9Mit211.1genetic marker43.7 F
38GT
X60367est43.7 F
111TA
124CT
53.6 F
R74805est53.6 F
27TC
56.8 P
32.MMHAP63FLC5.seqrandom56.8 P
97CT
Chr10
5.5 F
21.MMHAP26FLG3.seqrandom5.5 F to 5.5 P
31TC
42GA
68AG
16.4 F
L10106est16.4 F
140GA
41.5 F
R75378est41.5 F
22GT
47.0 P
26.MMHAP53FLA5.seqrandom47.0 P
37TC
50TC
62.3 F
08.MMHAP84FLC2.seqrandom62.3 F
30AG
62.3 P
14.MMHAP32FLE2.seqrandom62.3 P
74AG
94TA
63.4 P
14.MMHAP61FLE2.seqrandom63.4 P
28CT
Chr11
4.4 F
02.MMHAP90FLA2.seqrandom4.4 F
31TG
58CT
9.8 F
03.MMHAP34FRA9.seqrandom9.8 F
20CT
34TC
32.MMHAP26FRC11.seqrandom9.8 F
143TC
10.9 F
Results_ER_9_1_95_3_31.seqrandom10.9 F
137CT
12 F
MHAa67b4.seqrandom10.9 F to 13.1 F
46CT
13.1 F
21.MMHAP67FLG3.seqrandom13.1 F
49CG
16.4 F
02.MMHAP5FLA2.seqrandom15.3 F to 17.5 P
75GA
17.5 F
48.MMHAP46FRH12.seqrandom17.5 F
95CT
18.05 F
MHAa84f6.seqrandom17.5 P to 18.6 F
57CT
18.6 F
U14419est18.6 F
126AG
19.15 F
01.MMHAP59FRA7.seqrandom18.6 F to 19.7 P
113CT
19.7 F
32.MMHAP9FLC5.seqrandom19.7 F
53AG
120GA
25.1 P
30.MMHAP6FLB6.seqrandom25.1 P
123GC
26.75 F
15.MMHAP89FLE3.seqrandom26.2 P to 27.3 F
120AG
27.3 F
24.MMHAP48FLH3.seqrandom27.3 F
47CG
101AG
29.5 F
21.MMHAP66FLG3.seqrandom29.5 F
68CT
U21226est29.5 F
66TA
117AG
33.9 P
9_15_91.seqrandom33.9 P
27AT
37.75 F
03.MMHAP63FLA3.seqrandom37.2 P to 38.3 F
64CT
92TC
132CT
39.3 F
22.MMHAP12FRH7.seqrandom39.3 F
109CT
40.4 P
X84896est40.4 P
138CT
43.7 P
D11Mit324.2genetic marker43.7 P
67GA
44.8 F
D11Mit326.1genetic marker44.8 F
82AG
D11Mit38.2genetic marker44.8 F
80CT
45.34105 P
D11Mit369genetic marker45.34105 P
23TC
61.2 F
MHAa81g3.seqrandom62.3 F to 60.1 P
86GC
79.8 P
D11Mit103.1genetic marker79.8 P
30TC
Chr12
2.75 F
10.MHAa91e10.seqrandom2.2 F to 3.3 F
51GA
85CT
135AG
MHAa34f9.seqrandom2.2 F to 3.3 F
36CT
3.3 P
47.MMHAP44FLH5.seqrandom3.3 P
36GT
59CT
5.5 F
16.MMHAP46FRF7.seqrandom5.5 F to 5.5 P
30AT
93TC
99TC
139AG
18.MMHAP42FLF3.seqrandom5.5 F to 5.5 P
108AC
MHAa82a4.seqrandom5.5 F
116GA
X80899est5.5 F to 5.5 P
25CT
9.8 F
X60703est9.8 F
37TG
72TC
103AG
10.35 F
14.MMHAP86FLE2.seqrandom9.8 F to 10.9 F
107TA
23.0 F
17.MMHAP9FRF8.seqrandom23.0 F
36CT
67GA
Z11664est23.0 F
102AG
36.1 F
Z46227est36.1 F
140CT
51.4 P
D12Mit17.1genetic marker51.4 P
106TC
60.1 P
D12Mit41.1genetic marker60.1 P
88TG
Chr13
2.2 F
26.MMHAP70FLA5.seqrandom2.2 F
104AG
6.6 F
22.MMHAP67FRH7.seqrandom6.6 F to 6.6 P
101GA
24.0 F
40.MMHAP84FRF10.seqrandom24.0 F
77AG
97TA
MHAa34f2.seqrandom24.0 F
25CT
25.1 F
31.MMHAP76FRC10.seqrandom25.1 F
154GA
37.2 F
M62766est37.2 F
25GA
37.75 F
06.MMHAP34FLB3.seqrandom37.2 F to 38.3 F
61GT
38.3 F
D37797est38.3 P to 38.3 F
76AG
99GA
130GA
136CT
40.4 F
44.MMHAP88FRG11.seqrandom40.4 F
45AG
Chr14
0.0 P
30.MMHAP88FRB12.seqrandom0.0 P
29CT
2.2 F
MHAa7c2.seqrandom2.2 F
90GA
7.15 F
U30838est6.6 F to 7.7 F
95CT
20.8 F
12.MMHAP84FRD9.seqrandom20.8 F
149AG
16.MMHAP42FLF1.seqrandom20.8 F
131CT
38.MMHAP41FLE5.seqrandom20.8 F
79TC
102AC
23.9616 P
M73759est23.9616 P
57GA
107CT
25.1 P
U22516est25.1 P
21TG
27.3 P
37.MMHAP64FLE4.seqrandom27.3 P
62GA
109AT
30.6 F
09.MHAa55e9.seqrandom30.6 F to 30.6 P
56GC
82CT
124AG
M81445est30.6 P to 30.6 F
115CT
38.3 F
19.MHAa43d7.seqrandom38.3 F
48AC
84GT
52.5 F
09.MMHAP86FLC3.seqrandom52.5 F
49GC
96TA
98TA
26.MMHAP11FRA11.seqrandom52.5 F
71TG
42.MMHAP38FLF6.seqrandom52.5 F
110TC
MHAa70g10.seqrandom52.5 F
117AG
69.9 F
MHAa67g1.seqrandom69.9 F
120CT
Chr15
14.2 F
X97817est14.2 F
40GA
16.4 F
D15Mit139.2genetic marker16.4 F
153TC
17.5 F
45.MMHAP36FRG12.seqrandom17.5 F
54CT
84TA
35.0 F
M64849est35.0 F
99TC
123GC
U11075est35.0 F
95AG
44.25 P
10.MMHAP30FLD1.seqrandom42.6 P to 45.9 P
79CT
Chr16
3.3 F
Results_ER_9_1_95_2_24.seqrandom3.3 F
140GT
4.4 F
R74919est4.4 F
28AG
82GA
4.4 P
D16Mit192.2genetic marker4.4 P
89AC
7.7 F
R75266est7.7 F
49AG
112AT
25.1 P
38.MMHAP44FLE5.seqrandom25.1 P
61TG
81CT
118TC
29.5 F
D16Mit138.1genetic marker29.5 F
29GA
U13263est29.5 F
26AT
33.35 F
16.MHAa89f4.seqrandom32.8 F to 33.9 F
43TC
34.45 F
Results_ER_8_29_95_1_16.seqrandom33.9 F to 35.0 F
80CT
45.9 F
MHAa21c11.seqrandom45.9 F
143AT
48.65 F
34.MMHAP94FRD10.seqrandom45.9 F to 51.4 P
57TC
73AG
Chr17
2.75 F
L00653est2.2 F to 3.3 F
72CA
6.88799 P
MHAa34f3.seqrandom6.88799 P
22TA
10.35 F
35.MMHAP28FRD11.seqrandom9.8 F to 10.9 F
78CG
44.MMHAP25FLG5.seqrandom9.8 F to 10.9 F
54TC
27.3 F
38.MMHAP11FLE5.seqrandom27.3 F
82AG
140AG
33.9 F
30.MMHAP66FLB6.seqrandom33.9 F
130TC
D17Mit217.3genetic marker33.9 F
27TC
109TG
mHAa21e8.seqrandom33.9 F to 33.9 P
155TG
47.0 F
mHAa31f11.seqrandom47.0 F
21TG
50.3 P
D17Mit123.2genetic marker50.3 P
26TG
Chr18
6.20634 F
MHAa22g12.seqrandom7.7 F to 4.71268 P
130CA
9.8 F
X58995est9.8 F to 9.8 P
102TG
9.8 P
21.MMHAP54FLG3.seqrandom9.8 P
24GA
15.3 F
12_5_2_2.seqrandom15.3 F
49CT
134GC
9_15_61lon.seqrandom15.3 F
67TC
9_15_65lon.seqrandom15.3 F
96AG
Chr19
2.2 F
40.MMHAP45FRF10.seqrandom2.2 F
112CT
13.1 F
D19Mit110genetic marker13.1 F
28TG
D19Mit16.1genetic marker13.1 F
35GT
16.95 F
47.MMHAP5FLH5.seqrandom16.4 P to 17.5 F
85AG
34.45 F
26.MMHAP54FLA5.seqrandom35.0 F to 33.9 P
126CT
35.0 F
MHAa67a4.seqrandom35.0 F
37TC
94AG
44.8 P
30.MMHAP84FLB6.seqrandom44.8 P
87CT
ChrX
21.9 F
34.MMHAP28FLD4.seqrandom21.9 F
151TC

For further information contact:

Kerstin Lindblad-Toh