Related Metabolic Trait Results (updated May 2008)

Summary

PDF

Detailed Results for Related Metabolic Traits

• Description of downloadable tables
  Presented for online browsing are the top SNP results with p-values less than 0.001, sorted in rank order. A full tab-delimited file containing all 389,879 SNP tests performed is available for download. A Full collection of Multi-marker tests results will be available soon. The material available for online browsing contains the following information:

• CHR	Chromosome Location
  SNP	SNP identifier (“i_” flag denotes tested SNP by multi-marker imputation)
  PHYS_POS	Physical position (according to NCBI build 35)
  GC	P-value of Test statistic after correction by Genomic Control
  WALD	Raw Wald test statistic
  A1	Minor allele
  A2	Major allele
  MAF	Frequency of A1 allele (for the QTL sample)
  NMISS	Number of non-missing genotypes
  BETA	Regression coefficient
  SE	Standard error of regression coefficient
  R2	Regression r-squared
  GENE_LIST	Annotation of genes within 30kb of the SNP
  RANK	Rank order of the SNP over all tested SNPs (according to GC)

  Note: Headers apply to all results files for the DGI 500K Whole Genome Data.

• Instructions for using the results files
• Related Metabolic Traits Detailed Results Table

  * indicates new/updated documents since Feb 2007
  * indicates new traits since March 2007

  Trait Type	Trait Name	Description of Trait (PDF)	Table of Top Single Marker Results for Association (HTML)	Table of All Single Marker Results for Association (txt)	Phenotype summary statistics by genotype (txt) updated Sept 2007
  Glucose Traits
  	Fasting glucose	*
  	HOMA-IR	*
  	Insulinogenic index	*
  	Fasting insulin	*
  	2 hour glucose	*
  	2 hour insulin	*
  Obesity Traits
  	Body mass index	*
  	Cases
  	Controls
  	Weight	*
  	Cases
  	Controls
  	Height	*
  	Cases
  	Controls
  	Waist circumference	*
  	Cases
  	Controls
  	Waist hip ratio	*
  	Cases
  	Controls
  	Fat mass	*
  	Waist to eight squared	*
  Lipid Traits
  	ApoA1	*
  	ApoA2	*
  	ApoB	*
  	LDL cholesterol	*
  	HDL cholesterol	*
  	Triglycerides	*
  	Triglyceride/HDL cholesterol ratio	*
  	Total cholesterol	*
  Blood Pressure Traitss
  	Diastolic blood pressure	*
  	Systolic blood pressure	*
  	Hypertension	*