Data, Software and Tools
| Project | Type |
|---|---|
| CTD^2 Dashboard | Portals, Cancer, cell line profiling, small molecules, Therapeutic Response |
| CTD^2 Data Portal | |
| CTD^2 Data Portal, Broad Datasets | cell line profiling, Downloads, Therapeutic Response, small molecules, Cancer, Portals |
| Dasypus novemcinctus (Nine-banded Armadillo) | |
| Data Donation Platform (DDP) | |
| Data Use Oversight System (DUOS) | |
| DEMETER2 | RNAi, shRNA, gene dependency, data integration |
| DISCOVAR | variant calling, genome assembly |
| Dog Genome Project | Mammals |
| Drosophila sechellia | |
| Drug Repurposing Hub | small molecules, drugs, therapeutics, compounds, Portals |
| EIGENSTRAT | Genetic Analysis, GWAS |
| Ensembl | |
| Equus caballus (Horse) | Mammals |
| Exome Enrichment Automation | Next Generation Tools, Automation |
| FireBrowse | Cancer, Cancer Genome Analysis, TCGA, GDAC, Proteomics, cancer portals, visualization, CPTAC, pipeline |
| FRESCo | viral |
| FGI | FUNGI |
| Gasterosteus aculeatus (Stickleback) | Models |
| Gene Set Enrichment Analysis | Expression Analysis, Pathway Analysis, mutation, significance |
| GENE-E | Sequence Analysis, RNAi |
| GeneHunter | Genetic Analysis, Linkage Analysis |
| GenePattern | Tool Suites, snp analysis, RNAi, Proteomics, genetic variation, Gene Expression, RNA-Seq, data visualization |
| GenePattern Notebooks | GenePattern, data visualization, IGV, Tool Suites, genomic analysis, interactive notebooks |
| Genome Analysis Toolkit (GATK) | Genetic Analysis, Next Generation Tools, Tool Suites |