Data, Software and Tools
| Project | Type |
|---|---|
| ABSOLUTE | copy number, mutation, Cancer Genome Analysis |
| AsymTools | strand asymmetry, dna replication, Sequence Analysis |
| BreakPointer | Sequence Analysis, Cancer Genome Analysis, rearrangements |
| CCLE | cell lines, CCLE, cancer portals, cancer models, Cancer, cancer dependency, dependency map, cell line profiling |
| Cancer Datasets | Cancer, cancer data, Gene Expression |
| Cancer Dependency Map | cell line profiling, Cancer, cancer dependency, dependency map, cancer portals, achilles, CRISPR, CCLE |
| Cell STRAINER | cell lines, Cancer, copy number variation, genomic instability, genomics |
| CLUMPS | Cancer, protein structure, mutation clustering, Cancer Genome Analysis |
| Connectivity Map | Expression Analysis, Annotation, Portals, CMap, perturbations, Gene Expression |
| ContEst | Sequence Analysis, Cancer Genome Analysis, sample contamination |
| D-ToxoG | Cancer Genome Analysis, Sequence Analysis, mutation calling |
| de-TiN | Cancer Genome Analysis, Cancer, Sequence Analysis |
| Differentiation Map Portal (DMAP) | Portals, hematopoiesis, DMAP, differentiation map, cancer portals |
| dRanger | Cancer Genome Analysis, rearrangements, Sequence Analysis |
| Drug Repurposing Hub | small molecules, drugs, therapeutics, compounds, Portals |
| FireBrowse | Cancer, Cancer Genome Analysis, TCGA, GDAC, Proteomics, cancer portals, visualization, CPTAC, pipeline |
| FireCloud | Cancer Genome Analysis, cancer portals, Sequence Analysis, pipeline, cloud computing |
| Genome Data Analysis Center (GDAC) | cancer portals, Cancer Genome Analysis, TCGA, GDAC, CPTAC, Proteomics, pipeline, visualization, documentation, Cancer |
| GISTIC | copy number, Cancer, Cancer Genome Analysis, Sequence Analysis |
| InVEx | Genetic Analysis, Cancer Genome Analysis, Sequence Analysis, Cancer, exons, introns |
| LINCS | Gene Expression, CMap, Portals, perturbations, cell line profiling |
| Multiple Myeloma Genomics Portal (MMGP) | MMGP, cancer portals, Portals, multiple myeloma, MMRC, multiple myeloma research consortium |
| MuTect | mutation, Cancer, Cancer Genome Analysis, Sequence Analysis |
| MutSig | mutation, Cancer, Cancer Genome Analysis, Sequence Analysis, significance |
| Oncotator | mutation, Cancer, Cancer Genome Analysis, Sequence Analysis, significance |
| PHIAL | Cancer, Cancer Genome Analysis, Sequence Analysis |
| PolySolver | Cancer Genome Analysis, Sequence Analysis, HLA, mutation, Cancer |
| Project Achilles Data Portal | TCGA, shRNA, Portals, Cancer Genome Analysis, Cancer, CRISPR, RNAi, cell line profiling, cancer dependency, dependency map, cancer portals |
| RNA-SeQC | Cancer Genome Analysis, Sequence Analysis, RNA-Seq, RNA sequence analysis |
| SignatureAnalyzer | Cancer Genome Analysis, Cancer, Sequence Analysis, mutation, mutational signature |
| TARGET | Cancer Genome Analysis, Therapeutic Response, Cancer, clinical significance, actionable mutation |
| TCGA Copy Number Portal | TCGA, Cancer, Sequence Analysis, cancer portals, copy number |
| TumorPortal | Cancer, Cancer Genome Analysis, mutation, cancer portals, driver gene, gene annotation |
| Tumorscape | Tumorscape, copy number, cancer portals, Portals |