Data, Software and Tools
| Project | Type |
|---|---|
| ABSOLUTE | copy number, mutation, Cancer Genome Analysis |
| All of Us Researcher Workbench | |
| ALLPATHS | Sequence Analysis, Assembly |
| AmosCmp16Spipeline | Sequence Analysis, Assembly, Tool Suites |
| Anolis carolinensis (Anole) | |
| Anopheles | |
| Aplysia californica (Aplysia) | |
| Arachne | Sequence Analysis, Assembly |
| ATHLATES | viral, Next Generation Tools, HLA, genetic variation, exome sequencing |
| AssembleViral454 | viral, Next Generation Tools, Assembly, AssembleViral454 |
| Birdsuite | Genetic Analysis |
| Broad Bioimage Benchmark Collection | Imaging |
| CCLE | cell lines, CCLE, cancer portals, cancer models, Cancer, cancer dependency, dependency map, cell line profiling |
| Cancer Dependency Map | cell line profiling, Cancer, cancer dependency, dependency map, cancer portals, achilles, CRISPR, CCLE |
| Cancer Therapeutics Response Portal (CTRP) | Cancer, cell line profiling, Portals, small molecules, Therapeutic Response |
| Cell STRAINER | cell lines, Cancer, copy number variation, genomic instability, genomics |
| CellProfiler | Image Analysis, Tool Suites |
| CellProfiler Analyst | Image Analysis, Tool Suites |
| CERES | CRISPR, gene dependency, Cas9, sgRNA, Cutting Toxicity |
| ChimeraSlayer | Sequence Analysis, Tool Suites |
| https://trinityrnaseq.sourceforge.net/ | RNA-Seq, de Bruijn graphs, clustering |
| Ciona savignyi | |
| CLUMPS | Cancer, protein structure, mutation clustering, Cancer Genome Analysis |
| Connectivity Map | Expression Analysis, Annotation, Portals, CMap, perturbations, Gene Expression |
| Cromwell Workflow Engine | Computational biology and bioinformatics |