Posted on Tuesday, June 14, 2016 at 12:58PM by The GenePattern Team
GenePattern 3.9.8 is available for use on our Public GenePattern Server, via download, and as an Amazon Machine Image (AMI). The Release Notes give details on new features and improvements in this release. These details include:
Feel free to contact us with any questions or comments.
Sincerely,
The GenePattern Team
Posted on Tuesday, April 12, 2016 at 10:59AM by Barbara Hill Meyers
GenePattern 3.9.7 is available for use on our Public GenePattern Server, via download, and as an Amazon Machine Image (AMI). The Release Notes give details on new features, fixes and modules released since January 22, 2016. These details include:
Feel free to contact us with any questions or comments.
Sincerely,
The GenePattern Team
Posted on Tuesday, March 15, 2016 at 05:23PM by Barbara Hill
Due to the ongoing effort required in maintaining and updating gene annotation databases, we have had to end support for the GeneCruiser module. This means GeneCruiser will no longer be installed on any of our servers and will no longer be available from any of our repositories.
We are looking into alternatives for microarray annotation and will be sure to keep you posted as a new option becomes available.
Please note that this also means that the GeneCruiser functionality in the Java Applet versions of ComparativeMarkerSelectionViewer, FeatureSummaryViewer, GeneListSignificanceViewer, HeatMapViewer, HierarchicalClusteringViewer, and Multiplot* is also no longer operational.
If you need to convert Affymetrix probes to their corresponding genes, we recommend CollapseDataset. This module will combine all of the probe sets for a single gene into one representative value, "collapsing" Affymetrix probe sents into their corresponding HUGO gene annotations....