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Features

Analysis Pipelines

PipelinesGenePattern pipelines allow you to capture, automate, and share the complex series of steps required to analyze genomic data. By providing a way to create and distribute an entire computational analysis methodology in a single executable script, pipelines enable a form of in silico reproducible research.

Reproducible Research

ReproduciblePublished research, particularly in silico research, should contain sufficient information to completely reproduce the research results. By capturing the analysis methods, parameters, and data used to produce the research results, GenePattern pipelines enable reproducible research. By versioning every pipeline and its methods, GenePattern ensures that each version of a pipeline (and its results) remain static, even as your research and the pipeline continue to evolve.

Programming Environment

ProgrammingGenePattern provides a simple application interface that gives users access to computational analysis methods and tools, regardless of their computational experience. GenePattern also provides a programmatic interface that makes those analysis modules available to computational biologists and developers from Java, MATLAB, and R.


About GenePattern

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Funded by the National Cancer Institute's Informatics Technology for Cancer Research program and the National Institute of General Medical Sciences.

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GenePattern is a BioIT World Best Practices award winner.

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GenePattern is participating in the GenomeSpace initiative.

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Cite GenePattern

Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, Mesirov JP. GenePattern 2.0 Nature Genetics 38 no. 5 (2006): pp500-501 Google Scholar | Endnote | RIS

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Cite GenePattern

Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, Mesirov JP. GenePattern 2.0 Nature Genetics 38 no. 5 (2006): pp500-501 Google Scholar | Endnote | RIS

About GenePattern

Itcr Logo nigms
Funded by the National Cancer Institute's Informatics Technology for Cancer Research program and the National Institute of General Medical Sciences.

Logo bioit
GenePattern is a BioIT World Best Practices award winner.

Logo gs
GenePattern is participating in the GenomeSpace initiative.