Lee W-P, Stromberg MP, Ward A, Stewart C, Garrison EP, Marth GT. MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping. PLoS One. 2014;9(3):e90581. doi:10.1371/journal.pone.0090581.
Streit M, Lex A, Gratzl S, et al. Guided visual exploration of genomic stratifications in cancer. Nat Methods. 2014;11(9):884-5. doi:10.1038/nmeth.3088.
Zhang Y, Li L, Yang Y, Yang X, He S, Zhu Z. Light-weight reference-based compression of FASTQ data. BMC Bioinformatics. 2015;16:188. doi:10.1186/s12859-015-0628-7.
Vokes MS, Carpenter AE. Using CellProfiler for automatic identification and measurement of biological objects in images. Curr Protoc Mol Biol. 2008;Chapter 14:Unit 14.17. doi:10.1002/0471142727.mb1417s82.
Kuczynski J, Lauber CL, Walters WA, et al. Experimental and analytical tools for studying the human microbiome. Nat Rev Genet. 2011;13(1):47-58. doi:10.1038/nrg3129.
Carr SA, Abbatiello SE, Ackermann BL, et al. Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Mol Cell Proteomics. 2014;13(3):907-17. doi:10.1074/mcp.M113.036095.